HsaALTA1063361-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30736503-30738293:-
Coord C1 exon
chr2:30737162-30738293
Coord A exon
chr2:30736572-30736629
Coord C2 exon
chr2:30736503-30736571
Length
58 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGCTCTGGCTTTGTTGGCAGGAT
3' ss Score
7.44
Exon sequences
Seq C1 exon
CACCAAAACATGGAAAACTGCCTGGTCTACACAGCAGTTGCACCCCAGCATTGCTATGCTGCATTCACAGCGGGAGACGCTGGGCAGAGGCAGTTCAGAGACTCACTCCAGGCCCGTGGCTACAAGTGTAGGACCAAGAATTGAACCCCAGACTCCTGACCCTCCTCCTGATTTCCATTCCCCAGTGAGCCATCCTCTTCCTGCGTACCCCTGGCTTGGCAAGCAGAAGAGGCTGACTCCATGAGTGTAGACCCCCAGATGCTGCCCTGCCAGCCCCTCACTCGGCAGTGTGCTGTCTCCTGAGACGCATTGCCCCGCTCCTGCACCGTTGACAAGGCTGAATTGGGACTGTGAAGCCGGCCATTGTGAAACAAGAGGGCTTTTTTGATGAAATCATAAATCAGGCCCTGTCTCTGCTGGCTGTGCTTTGGAATCTATCAGAGACACAGCCCATCTCCCACAGAGGAATCCAAATGGTCCTCACAGTGCCACGGCCCGGG
Seq A exon
GATGGCAGCCCCTCTGCACCTTGCACGCTGGCTGGTTCACTCTTAACTCCTTACCCAG
Seq C2 exon
CTGAAAGTGAATGGGCGGCTAGACCAAGAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-44-39,44-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PD(32.7=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGACACAGCCCATCTCC
R:
CTGGTAGTGAACAAGGCGCTT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains