HsaEX6012729 @ hg38
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30736503-30738457:-
Coord C1 exon
chr2:30738400-30738457
Coord A exon
chr2:30737162-30737476
Coord C2 exon
chr2:30736503-30736571
Length
315 bp
Sequences
Splice sites
3' ss Seq
TCCTGATTTCCATTCCCCAGTGA
3' ss Score
6.62
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGGCTGGACATTGATGCCACCCAGCTTCAGGGCCTTCTCAACCAGGAGCTTCTAACAG
Seq A exon
TGAGCCATCCTCTTCCTGCGTACCCCTGGCTTGGCAAGCAGAAGAGGCTGACTCCATGAGTGTAGACCCCCAGATGCTGCCCTGCCAGCCCCTCACTCGGCAGTGTGCTGTCTCCTGAGACGCATTGCCCCGCTCCTGCACCGTTGACAAGGCTGAATTGGGACTGTGAAGCCGGCCATTGTGAAACAAGAGGGCTTTTTTGATGAAATCATAAATCAGGCCCTGTCTCTGCTGGCTGTGCTTTGGAATCTATCAGAGACACAGCCCATCTCCCACAGAGGAATCCAAATGGTCCTCACAGTGCCACGGCCCGGG
Seq C2 exon
CTGAAAGTGAATGGGCGGCTAGACCAAGAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949_MULTIEX1-3/9=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(29.1=80.0)
A:
NO
C2:
PF138331=EF-hand_8=PD(32.7=78.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains