BtaEX6044974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69120462-69122654:+
Coord C1 exon
chr11:69120462-69120519
Coord A exon
chr11:69120613-69120671
Coord C2 exon
chr11:69122586-69122654
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTCTTCCGCTCAGGAC
3' ss Score
9.6
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GGGCTGGACATTGATGCTACGCAGCTTCAGAGCCTTCTCAACCGGGAATTCCTAAGAG
Seq A exon
GACCTCCAGGGGACCCGTTCTCCTTGGATGAGTGCCGCAGCCTCGTGGCTCTGATGGAT
Seq C2 exon
CTGAAGGTGAACGGGCGACTTGACCAGGAGGAGTTTTCAAGGCTGTGGAGCCGTCTCGTCCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'20-19,'20-18,21-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(30.4=85.0)
A:
PF138331=EF-hand_8=FE(33.9=100)
C2:
PF138331=EF-hand_8=PD(32.1=78.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACATTGATGCTACGCA
R:
CTGGCAGTGGACGAGACGG
Band lengths:
125-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]