GgaEX6028704 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7774865-7777240:+
Coord C1 exon
chr3:7774865-7774922
Coord A exon
chr3:7775667-7775734
Coord C2 exon
chr3:7777172-7777240
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTCAATCCTTGCAGATG
3' ss Score
10.44
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GGCTCAGCTATTGATGCTTTGCAGTTGCAACGACTTCTTAATGACATGGTCCTGCAAG
Seq A exon
ATGAAATGACCAGCGTGGGAGGAGAGTTCAGCTTTGATTCGTGTCGAGCCATTTTAGCTCTGATGGAT
Seq C2 exon
CTCAATTCAAATGGACAACTCACACTGCAGGAGTTTGGGAGCCTCTGGCGAAGTGTCACCAAGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003627=EF-hand_1=PU(31.0=39.1)
C2:
PF0003627=EF-hand_1=PD(62.1=78.3),PF134991=EF-hand_7=PU(3.3=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGCTATTGATGCTTTGC
R:
CATGTACTTGGTGACACTTCGC
Band lengths:
127-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]