RnoEX6027765 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24595641-24597412:-
Coord C1 exon
chr6:24597355-24597412
Coord A exon
chr6:24597212-24597270
Coord C2 exon
chr6:24595641-24595709
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCAGTCTTCTCCTTCCTCAGGGC
3' ss Score
9.96
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GGGCTAGACATTGATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACAG
Seq A exon
GGCCCCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCACTGATGGAT
Seq C2 exon
CTGAAAGTGAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGACTACAGAGTCGCCTGATCCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'22-29,'22-27,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(27.9=100)
A:
PF138331=EF-hand_8=FE(27.9=100)
C2:
PF138331=EF-hand_8=PD(26.5=78.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTAGACATTGATGCCAGC
R:
GCAGTGGATCAGGCGACTCT
Band lengths:
124-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]