MmuEX6079241 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73324769-73326532:-
Coord C1 exon
chr17:73326475-73326532
Coord A exon
chr17:73326324-73326382
Coord C2 exon
chr17:73324769-73324837
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATGTCAGTCTTCTTCCTCAGGGC
3' ss Score
8.76
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GGGCTGGACATTGATGCCACCCAACTTCAGAGCCTTCTCAATCAGGAGTTCCTAACAG
Seq A exon
GGCCTCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCCCTGATGGAT
Seq C2 exon
CTGAAAGTGAATGGGCGGCTAGATCAGGAAGAGTTTGCAAGACTCCGAAGTCGCCTTATCCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'25-28,'25-26,26-28=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(30.4=85.0)
A:
PF138331=EF-hand_8=FE(33.9=100)
C2:
PF138331=EF-hand_8=PD(32.1=78.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCCCCTTGATGCTGCAG
R:
GTGCCTCACCTCTGTTTCTGT
Band lengths:
138-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types