DreEX6052406 @ danRer10
Exon Skipping
Gene
ENSDARG00000008553 | zgc:136872
Description
zgc:136872 [Source:ZFIN;Acc:ZDB-GENE-060421-5204]
Coordinates
chr17:3082039-3082434:+
Coord C1 exon
chr17:3082039-3082096
Coord A exon
chr17:3082185-3082249
Coord C2 exon
chr17:3082366-3082434
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTCTGATATTTCAGGAC
3' ss Score
8.09
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
TATGGTGAAGTGGACGCTGAGCGGCTTCAGAAACTCCTGAACGAGAATCTTCATGCAG
Seq A exon
GACGTTCACAGAAAACAACAGGATTCAGTGTGGATTTGTGTAAGAGTCTGGTGGCGCTGATGGAT
Seq C2 exon
CTCAGTGTCACAGGAAGACTCAGTGAATTTGAATGCCTTCGTTTGTGGAAACGAGCCGTTTTTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008553-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134991=EF-hand_7=PU(3.3=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTGAAGTGGACGCTGAG
R:
ACGGCTCGTTTCCACAAAC
Band lengths:
117-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]