HsaEX6012729 @ hg19
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30959369-30961323:-
Coord C1 exon
chr2:30961266-30961323
Coord A exon
chr2:30961101-30961159
Coord C2 exon
chr2:30959369-30959437
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCCTTCTCTCCTCAGGAC
3' ss Score
13.06
5' ss Seq
GAAGTATCC
5' ss Score
-0.29
Exon sequences
Seq C1 exon
AGGCTGGACATTGATGCCACCCAGCTTCAGGGCCTTCTCAACCAGGAGCTTCTAACAG
Seq A exon
GACCTCCAGGGGACATGTTCTCCTTAGATGAGTGCCGCAGCTTGGTGGCTCTGATGGAA
Seq C2 exon
CTGAAAGTGAATGGGCGGCTAGACCAAGAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-'26-28,'26-26,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(29.1=80.0)
A:
PF138331=EF-hand_8=FE(34.5=100)
C2:
PF138331=EF-hand_8=PD(32.7=78.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATTGATGCCACCCAG
R:
CTGGTAGTGAACAAGGCGCTT
Band lengths:
124-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)