HsaINT0027411 @ hg38
Intron Retention
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30758046-30763156:-
Coord C1 exon
chr2:30763082-30763156
Coord A exon
chr2:30758138-30763081
Coord C2 exon
chr2:30758046-30758137
Length
4944 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTTTCTGTTTTCTTTACAGATT
3' ss Score
13.27
Exon sequences
Seq C1 exon
CCAACAGATACAGCACAGGCGATGGAGAATGGGCTGGTGAGTCTCCATGCCTACACTGTGACTGGGGCTGAGCAG
Seq A exon
GTAAGGCTGGCTGCTGGCCTGTCCAGCTCTCCCCTGGCCTCTGCCCCAGTGTTCTTGTTCCTCTCAATAGGGGCCAGAATCACATGAAAGCCCAAGAAAGATGAAATGAGGATATATCGCCCTTGCCTCTGTGGTGACATGCACCATGGACAGCCTCAGCTCCTTCTGTTCAACCAGAAGTTCTGACTCCCAGTGTCCTCCTTTCTGAGAACCCACCAGAGATGTTGCTGTCCTGTTGCTGATCTCAGACAGCTCTGACTGTCTATCTAGACTGGGAGATTAGCCCCAAAGGAGGTAGAATGAACTACCCAGTTGACTCCAGGGAGGAAGTTTTGCCCTGAAAGGGGTTTTATTTGTTACATGCAAGCTAAATTGTTGTAACAAAGACACTCCAAAATATAGGGTCTTAAGACAAGGTTCATTTCTCTCTCAGGTAAGCAGGTGATGCCAGGACTAGTAGGTGGCTCTGCCATCCTCGACATGGAGCTTCCATCCATGTGCCCAAGACAGCTGCTCTGATCCCTCATCTCCCAGCCAGGGGAGAGAAAGAGGCCAGGAGACACTCATACGTCCATATAGAAGGCATGAATTGGAAGAGGCATGCATCATTTCTCTCACATCCCATTAGTCTAAGCTTAATTATATGACCACACCAAGGCCAAGGGAGGCTGGGACATACACTGTCTAGCTGGGCCCCATATGCCCAGATAAAACTTTATTCTCATGGAAGAGGAGGAGGCTGGCACTGTAGGACAATCGTGCTCCTCAGTGGAAGAACTGACTTTGGCTGGACAAAAATGTATGTGATCACTGGCCTGGAAAATACTACTGAAGCACAACCTTCTCCGTTCATAAAGGAAGAAGCTGAGACCTGATAGGAGAGATGTCTTTCACGAGGTTAGATAGATAGCATCTGAGAGACAGCTGGCCTGGACACTCTGTCTCTTTAGTGTCCGTCTACATTTGTCACCACACTTGCGGTGACAGCACTTCCTGGCTATGGGATGGTTTCCTGCAAGTGTTCCCTGATCTCTGTATTTCCCACAACACTTGAGGTCTAATAATGTCTTCTAAGCCCTGAGAGACCAAGTTCCAAACTCTAGGGCACATAATTTCTCCCAGGACTTTATGGACCAAGGACTGCAGAGCATCAGGCTCTATGTGTGGCTTTCTCATACTTGCCTGGCCTCTCCTCCTTTCCCACATGTCCTTCCTCTCTCTACCCATCTGTCTCTCTTGTCCATGGACCTGAGGCCAGTTGTTCCATTGTTTCATGGTTTGATCGGTGTCCCAATCACAAAACCAAGACAGTATCTCCAATCTCTAATGAATGCTTTTTGGACGATAGGTAATTGTCCAAAATTGACCTCAGCACTTCCAGATTCATGGAAAGAGAGCTGTTATCAATTAGTAATACCTGTTTGGGGCATGAGATGAGGAAGTCAGGTGCCTTTGCAATGTATTTGCCATTCTTGGACAAGATCCTTTTTATACATTGAGATAGCCTTTGTTTCTCCTCTGAACACAGGGGAGAAGGGATTCGTGTACCCAGAGGTCCAGATGACCTTGGAGCATGAGTCCCCGCAGAGGCTGGCTGTGGAGATGGCAGTGACTGCTGGGTTGCAGAGCAGCTATGTGAACACCTAGGGTGACAAAGGGGAGCTCGGGAGTCCAAGTGTGGGCTCAGCTGCCGTTTGGGCTCCTGATCATGACACCCACAGCTCGAACATTTGTGCCCCCATAGTGTACACTTGGAGTTGTTTCAATAATATACCGAGTGGTCTAAACAGAGCACCTCCCCTGGGAAGACAGGTGATCAAGACCGCATGTCCCGTGTAATCCATCCCTGCTCCACCATTCCATGTAGCTGACACTTCCCAGAATGTGTTCTAAGAAGCACTAGCCTCTATGAAAATGGGTTTCCAAATACATTTGGAAAAGCAACTCACTATATCCCCTCCTTGGAGATTCAGAGTGTACATTCACATTTTAAGGACTCCAAGCGGCCTGTATGAACAGTGCAAGCACTGCTGGTTTTTATTGTACCATTAGCCACAAAACCATTTTTGCTAGGAATAACTGTTAATGGCCAGTGGAACTGGCATTCGGGATAATTCATTTGAGGAAGTACTACTGCAGGGTAGATAACTCGGGCCACCTCCTGCCCAGTAGCACCTTTTCTGAGCACTGAGCAGGGTCAGAGGCAGAGTCAGAGGCCAGGGAGTGAAGAAGCATGTGGCTGGCCCATTCTCAGGTGTAGCCATGGCCTTGGCCTCGCGTGTGACCCCTGCTCCCCCAGACCAAGGCCCATGCGAGCGCCAATAGGTCACTGTCATAAAGGAGGGACACAAGGGCTCACGAACTTGACTTGGTTAAAGATTCCTCCTCCAGAGAGAGGCAGTTCTAACTCTGAACCACAAGTGCTAAGATTAAACCAGCCCATAAATGTGGCGCGCTTTTTAATCTGCTCATCCTCCCTCTAGGCGGGACACAGACAGGAAGATAAATGAAATCGGCATTTTTTATTATGCACCTAGCTCAGTCGGCGATTCCCCTGGGCATAGGGGTGAGTGTTTATCTGCATGCCTCGTTTAGCCCTGCTTTCAGCCCCTTTGAATCGCAGGCTGCTTTTCTCCCCACCATGCCCACTGGAGCCCCTGAGTATCTGTGAGGCACTGACGGTGGCTCATTAAGCTGTTTGGGACACCAAGTGACCATTGCTTGTGTCCCTGCTCCATGGGCTCTGTCAGGTGCTGGCAGTTAACAATAAACTGCGTATCCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAGATTAGCCGGGCATTAGGCGGGTACCTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGACGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACCCAGCAAGACTCCATCTCAAAAAAAATCACAACAATAATAAATGGCGTGCAAGGCCTGGGGTGCCTTAGGGTAGGGCAGACAGGGGTGGAAAACCTGGGTTCGTGCCTCTTGGAGGCATTGCAAGTCAGAGCCCCTTCTGCTGAGGTACTGGCCAGGGAGCGGGGCAGGCAAGGGAAGCAACAGAAAAGAGCCTTATCCGAGCCAGGCTCCTGGGCCCATGTGTGACTGTGCGGCTCCTGCACAGCAATGCCCCACTGCTGAGCATGGGAATTGACCAGGTGGCTCAAGGGTCACAGTCGAGGCCAAGGTCACAGCCACATCCAAGAACGAACCTTTACTCATGCCTAATTCCAAAACTAGGAGCCCGGACTTTAGATACTCACCGTGGCTGGATTGGAATTCTGCCTCCGCCGCTGTCTCAGCGGTATTGAGAAAGTTGCTCAGCTTCTCTAGTGCCGTTTCCTTAGCGCACATCAGCCCGCACCTAGCTCTGAGCCCTGCGTCCACCTGCGGCTTGTCTTCCACACAGCGATAGTCTATTCTATTCAGACTTGTCCTTCTCCTCTGACCAAGAATCATGGAGCAAGTTCGCCCCTTTCCTCACCCCTCTGGGCCTCTGTCTCCTCAGACAACATTAGCACAGATTGATATCACAGCTACAGCTCAGTCATATTTTAATTCCTCTCGCCATGCTGAGGGCTGCCGGCTCCCGGGGATGCAGATTCAAGGGTTGGCTGCTGTGTTGTTGTCACTTTCCCACAGTCCTGCCCTCTGGCTTAAGCGGTGTGAGGGAGCAAAGGGGTAGACCTCCTTATCTGAAGTGCACGACTATGAGTTACCCCAGACAGGGGGCAGGAAGAAAAGAAAGGAAGGAGGAAAGGAGGGAGGGAGAGAAGAGGGAAGGCAGGGGGTAAAGAAGGAAGGGAGGGATGGAAGGAGGAGAAAAACGAGGGAGGGAGGAAAAAAGGAAGGGGAAGAGGGAGGAAGGAAGAGACAGAGGAAGAAAGGGAGGGAGGGATGAAGGGAGGCAGAGAGGAAGGGAGGGAGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAAGGAAGAATAGGAGCAGGGAAGGGAAAAGGATAGGGGCAAGGGGGGAAGAAAGGAAAGAAACAGAAGGAAGGAGGGAAGAAAGGGAGGGAGGGAGGAAAAGGAAGGAAAGAAAGAAGGGAAGACGAGAGGGAGTAAGGGAAAGGAGGGTAGGAAGGGACTGAAGGATGGAGGGAGGGAGAAAGGGAAAGAAGGAAGGGAGGAAGGAAGGGAGGAAGGGAAGGGAGGGAGGAAGGAAAGGAAAGGGAGGGAGGGAGGAAGGAAAGGAAAGAGAGGGAGGGAGGGAAGTTCAGGATATTGTTGGCCATATTCTCTCAGACCAAGGTGTCTCATCAGCTCCGGGATGCAGGACGAGGAGGGCTAGCCTTGGCTATCTTGGTTCACAGGCCATCTCAGTCTTGCTCAAATCTGCCTCCTCTACCCTCCTCACTCACGACAGTGCTGTTGAGACTGCACCATAGCTCCCACTGGGCTGCCGGCAGAGAATCAGGCTGCGTCTGTGGAACAGATGCCATCCATGACAGGGCTTGGAGGAGGCTGGGGAACCATAAAATTCTCTGCAGCCCGAAGCAACATCCCCTGCTGTTTATCTGCTATTAAATCTCAACTCACTCAGGTTCTGGGATTCAGTCTTAGGGAATGATGAAGTTGCATCTGCCCTTGCAAGGGGCTGAGCGGAATGAGGGGCCATTTCCTTGTCTATCTCATTCCAACGCCATGCAGGCAGTAGAGAGACATTGATTTTTTTTTCCCTTTCAATTTTTTTTCTGGCTGCAGCCAAATGAGGTCAGAAGTTAAATTGGTCCTTGGAGGTAAAAAGCAGCTGCATTCATCCCCCTTTCTGCTGACTTTTGCTGTAGAGCACTGAGTTTCCTTTTCTGTTTTCTTTACAG
Seq C2 exon
ATTCAATACCGAAGGGGCTGGGAAGAAATTATCTCCCTGTGGAACCCCTGGGGCTGGGGCGAGGCCGAATGGAGAGGGCGCTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949:ENST00000295055:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development