HsaEX0013058 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76751934-76797141:+
Coord C1 exon
chr7:76751934-76752049
Coord A exon
chr7:76794169-76794297
Coord C2 exon
chr7:76796975-76797141
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACGTGCTTTCCATGTTATAGAGT
3' ss Score
6.87
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATACCAAGGACGCGACTTCTTGTTTGGAGAGGGTGGAGCTTTGGAGTGAGACCCAGGAGGCCAAATCCCAAAGAGAAAAATAGGAGCCTAAATAAGGATCAGGACCAAGGGAAGGG
Seq A exon
AGTGAGGCTCAGTGTCATCAAGGAACAGCCAATCCAATGAGATTGACATGAGAAATGATACATATTCAGCAGAAGATCAGACCTTAAAAGCATGACAATTGCAGTTATCTTCTCTGGCAAGAGAAGAGT
Seq C2 exon
AATCGTGAAAAATGGAAGACAGTAGCACAGACACAGAAAAAGAAGAGGAAGAGGAGAAAGATGAAAAGGATCAAGAGCCCATTTATGCCATAGTGCCCACAATTAACATTCAAGATGAGCGGTTTGTTGATTTATCTGAAACTCCAGCTTTCATTTTTCTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'2-4,'2-3,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.519
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF039618=DUF342=PU(14.7=38.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACGCGACTTCTTGTT
R:
TCAACAAACCGCTCATCTTGA
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)