HsaEX0013059 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76751934-76866346:+
Coord C1 exon
chr7:76751934-76752049
Coord A exon
chr7:76796975-76797141
Coord C2 exon
chr7:76866264-76866346
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATGTATTAATTTTATTTTAGAAT
3' ss Score
7.53
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
ATACCAAGGACGCGACTTCTTGTTTGGAGAGGGTGGAGCTTTGGAGTGAGACCCAGGAGGCCAAATCCCAAAGAGAAAAATAGGAGCCTAAATAAGGATCAGGACCAAGGGAAGGG
Seq A exon
AATCGTGAAAAATGGAAGACAGTAGCACAGACACAGAAAAAGAAGAGGAAGAGGAGAAAGATGAAAAGGATCAAGAGCCCATTTATGCCATAGTGCCCACAATTAACATTCAAGATGAGCGGTTTGTTGATTTATCTGAAACTCCAGCTTTCATTTTTCTGCATGAG
Seq C2 exon
TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'2-6,'2-4,4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF039618=DUF342=PU(14.7=38.5)
C2:
PF0226314=GBP=PU(14.0=50.0),PF039618=DUF342=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACGCGACTTCTTGTT
R:
CTCATCACGGCGTCATGC
Band lengths:
196-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)