MmuEX6016093 @ mm10
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21333020-21424677:-
Coord C1 exon
chr5:21424565-21424677
Coord A exon
chr5:21399617-21399849
Coord C2 exon
chr5:21333020-21333102
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGGAATTATTTTACTTTAGAAC
3' ss Score
4.12
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GATACCAAGGACGCGACTCTTAGGAGAGGGTGAAGTTTTGAAGTGAGACCCCAGGGACCAAAACACACGGAGAAAAATAAGAGTTTAAACAAGGATCAGGACCAAAAGAAAGG
Seq A exon
AACTGTGAAAAATGGAATACAATAGCAAAGATGCAGAAGAAGAAACTGAAGATGAAGAGGAGGGACTGAAGGAGGCGGAGGGGGAGGAACAGGAGAAGGAGGAGGTAACAGCAACCTCAGAAACAGACGATGACCAAGAAGACCTCCCTTCTGTCTTAGTGCCTACAGTTAACATTCGGGAGGAGCGGCTCATCAATTTAGCTGAAACACCAGCTTTCCTCTGTCTGCATGAG
Seq C2 exon
CTGCACTCCAAGGGAAAACTTCCTGGAACCAGAATGGCAGAGTTGAAAGCCAAGTACACCTTGCTACACGATACAGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'2-11,'2-1,4-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.676 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACCAAGGACGCGACTCTT
R:
CTCACCACTGTATCGTGTAGCA
Band lengths:
196-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types