HsaEX0013059 @ hg38
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77043273-77237029:+
Coord C1 exon
chr7:77043273-77043778
Coord A exon
chr7:77167658-77167824
Coord C2 exon
chr7:77236947-77237029
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATGTATTAATTTTATTTTAGAAT
3' ss Score
7.53
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
AGTAATAACAAAACAAATCTCTATTTGAGAATCAATAAATCTTGAGATCATTTATGGTTTTGCAATTCAACCTGAAAAATGAAGTCAGAGCTTTTATCAAAACAAAGCATGTTTAGTGCTCTCTGTCTCACTGTCTTTTAGATGCCAGACCTTAGATTTTGTGATGACTCCTCAACCGTTTAGATCTCGGTTATCTCAGAGGGATCATCAGCTTTTTAAGAAAATTTTGAGAGAAAAGCAAGTGAAGAAAAGAGTAGTCAGTGCCCAACATCACGGATCTCTCACTGAACACACCATGCCTGGTATTCTCTCACAGTGATGTCACCATTTCTACCTGCCACGTATCGGCGAAGGTTGGGACTCGACTGGTGTTTGATCACGATGGGAAAATCATCCAGAAAACCCCCTACCCCCACCCCAGAGGGACCACAGTCAGCGTGAAGCAGTTATTTTCTACGCTACCTGTGCGCCATAAGGAATTTCAAAGGAATATTAAGAAG
Seq A exon
AATCGTGAAAAATGGAAGACAGTAGCACAGACACAGAAAAAGAAGAGGAAGAGGAGAAAGATGAAAAGGATCAAGAGCCCATTTATGCCATAGTGCCCACAATTAACATTCAAGATGAGCGGTTTGTTGATTTATCTGAAACTCCAGCTTTCATTTTTCTGCATGAG
Seq C2 exon
TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205_MULTIEX1-1/6=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.513 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGAACACACCATGCCTG
R:
GCCATTCTGGTTCCAGGAAGT
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development