HsaEX1007309 @ hg38
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77167658-77237029:+
Coord C1 exon
chr7:77167658-77167824
Coord A exon
chr7:77176474-77176542
Coord C2 exon
chr7:77236947-77237029
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGCATTCTGATTTAGGAA
3' ss Score
8.28
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
AATCGTGAAAAATGGAAGACAGTAGCACAGACACAGAAAAAGAAGAGGAAGAGGAGAAAGATGAAAAGGATCAAGAGCCCATTTATGCCATAGTGCCCACAATTAACATTCAAGATGAGCGGTTTGTTGATTTATCTGAAACTCCAGCTTTCATTTTTCTGCATGAG
Seq A exon
GAAATCAGCCAAATTATGGCACCATACATGAGAGTTCAGAAGAAGCAACAGGTCTGAAGGGAATGTCCG
Seq C2 exon
TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205_MULTIEX1-2/6=1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000285871fB11484
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAAGAGCCCATTTATGCCA
R:
GCGTCATGCAGCAAGGTATACT
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains