HsaALTD1020761-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77167658-77237029:+
Coord C1 exon
chr7:77167658-77171470
Coord A exon
chr7:77171471-77171574
Coord C2 exon
chr7:77236947-77237029
Length
104 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CCTTATGTTCTCTTTGCTAGTTA
3' ss Score
8.1
Exon sequences
Seq C1 exon
CCATGATTTCCTTCCTCTAATCTTAATATTTTAAGTGAAGAGTTCACATTTCTGTCAAAATCCATCATATGTCGAACTTTGCAATAAAATTTCTACTTCTCCACCACTACCCTTAATAATCAAATCAAAAATAAGGCTAAACTTGTGTCATACATTTGTTTGATATAGTAGCTACCAAAGACGTTGACTCAACACACACTTATGATGTAAGCTCATGCATTTTTAGGTCTGACATAAGTTGTTTGAAACCCAATCATACCCGATCTTTGTACTAGTTAAAATAACTCCTCTCCATGTGGTTGAGATATAGCCCACTTGTTTCTCATCCTGCTAATCCCAAACCCAAAACACCCGACAGCTGCTAACTGTGATAAAACTTAATGATCAACACCAGAGTCATATAAATAAGTTTCCCCCTTCTGGCATGTTTTCCTTAAACCAGCCAATCCACAACTCCTGTGAGAAGACCGGAGGGATAATACCCATATACCTTAATAAAG
Seq A exon
GTGAGCTCCCATAGCTGCTCTCTCACTCCCTACCCACTGCTGAGCTCCCTGCCACCTCCAGACTTATCTGCGCTCCCCATCAGTACCCCTAAGCTGTCAGATCT
Seq C2 exon
TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-3-6,4-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCTCCATGTGGTTGAGA
R:
GCCATTCTGGTTCCAGGAAGT
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains