GgaEX6000479 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12571733-12603032:-
Coord C1 exon
chr1:12602945-12603032
Coord A exon
chr1:12601116-12601282
Coord C2 exon
chr1:12571733-12571815
Length
167 bp
Sequences
Splice sites
3' ss Seq
GGTATTTTGTTACTTCCTAGATC
3' ss Score
6.49
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
AAATGTGTACAGAGGCACAAATAAAGCAACAGCAGCCATAAAGGTGAAATGTGTATTCTCAAATATTCAGCAATTTTGTAGATGAGAA
Seq A exon
ATCTCCAGAAAATGAGTCAAGCTGGTGATGAAAGTTCCAGTTCCGATGAAAAAGAATTGGAAGTCGAGAAGGAGCAACCTATCTGTGCTTTAGCTCCAACAGTATATACCCGAGACGAAGGATCCACTGATGTAACATCAAGTCCTGCATTTCAGTGTTTAGATGAG
Seq C2 exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'4-4,'4-1,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.643 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGTACAGAGGCACAAATAAAGC
R:
CTTCTCACAGTTTCATGCAGCA
Band lengths:
170-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]