MmuEX6016093 @ mm9
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:20838838-20930495:-
Coord C1 exon
chr5:20930383-20930495
Coord A exon
chr5:20905435-20905667
Coord C2 exon
chr5:20838838-20838920
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGGAATTATTTTACTTTAGAAC
3' ss Score
4.12
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GATACCAAGGACGCGACTCTTAGGAGAGGGTGAAGTTTTGAAGTGAGACCCCAGGGACCAAAACACACGGAGAAAAATAAGAGTTTAAACAAGGATCAGGACCAAAAGAAAGG
Seq A exon
AACTGTGAAAAATGGAATACAATAGCAAAGATGCAGAAGAAGAAACTGAAGATGAAGAGGAGGGACTGAAGGAGGCGGAGGGGGAGGAACAGGAGAAGGAGGAGGTAACAGCAACCTCAGAAACAGACGATGACCAAGAAGACCTCCCTTCTGTCTTAGTGCCTACAGTTAACATTCGGGAGGAGCGGCTCATCAATTTAGCTGAAACACCAGCTTTCCTCTGTCTGCATGAG
Seq C2 exon
CTGCACTCCAAGGGAAAACTTCCTGGAACCAGAATGGCAGAGTTGAAAGCCAAGTACACCTTGCTACACGATACAGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.676 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACCAAGGACGCGACTCTT
R:
CTCACCACTGTATCGTGTAGCA
Band lengths:
196-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: