DreEX6002482 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20456551-20463254:+
Coord C1 exon
chr4:20456551-20456603
Coord A exon
chr4:20457095-20457262
Coord C2 exon
chr4:20462962-20463254
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTATGTTTGTGCAGGTC
3' ss Score
8.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGACTGAAACTGCAGAGATTTAAACGGGTGAACAACTTATAAAAAGGCCACG
Seq A exon
GTCATGATGAGGCAGGCACAGCAGCGGAGCTCTTCGCCGTCACATGATGACCAGCAAGAGTCCAGCGAGAGAGCAACGCCCATTTCTGCCCTCGCTCCAGAGGTTGATTTAAATCAAGAACAACCTGCGGTCCTGTCATTAAATCCAGCCTTGCAGTGCTTGGAACAG
Seq C2 exon
CTCTTCTCCACTGGAAAGATCAGCGTGGAAAAAGTGGCTCGTCTTAAAGCCAGTTTCAACCTCTTAAATGAAACTCTGAGAAGTTCTCAGGACTCTGAAATGCAATTGCTCCTGGAGGCGAAGACCTTGCGCATGACATTAGAGCAGCAAAGGCAGGAGCTGGAGAATGCTGAACTTTTTCCTGAGGGACCAGACACAGAGGTCAGCAGACTGAAGCAGACACTCCTGCAGTACTACAACCAACTGAAGGAGGACGAAGAAAGAGATTATCAGATGCAATTTCAGCTTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.727 C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGAGATTTAAACGGGTGA
R:
CTGTGTCTGGTCCCTCAGGAA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]