GgaEX6000479 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13727220-13760794:-
Coord C1 exon
chr1:13760764-13760794
Coord A exon
chr1:13756603-13756769
Coord C2 exon
chr1:13727220-13727302
Length
167 bp
Sequences
Splice sites
3' ss Seq
GGTATTTTGTTACTTCCTAGATC
3' ss Score
6.49
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
CAGAGAAGGACTTTATTACCAGTAGAAGCAG
Seq A exon
ATCTCCAGAAAATGAGTCAAGCTGGTGATGAAAGTTCCAGTTCCGATGAAAAAGAATTGGAAGTCGAGAAGGAGCAACCTATCTGTGCTTTAGCTCCAACAGTATATACCCGAGACGAAGGATCCACTGATGTAACATCAAGTCCTGCATTTCAGTGTTTAGATGAG
Seq C2 exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'1-3,'1-1,5-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.615 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGGACTTTATTACCAGTAGA
R:
CTTCTCACAGTTTCATGCAGCA
Band lengths:
114-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]