HsaINT0064041 @ hg19
Intron Retention
Gene
ENSG00000127951 | FGL2
Description
fibrinogen-like 2 [Source:HGNC Symbol;Acc:3696]
Coordinates
chr7:76822688-76829150:-
Coord C1 exon
chr7:76828498-76829150
Coord A exon
chr7:76826303-76828497
Coord C2 exon
chr7:76822688-76826302
Length
2195 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCCTTTTATTTCCCCTTCAGTTC
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCCCTGCGCACTCCCTGCTGGGGTGAGCAGCACTGTAAAGATGAAGCTGGCTAACTGGTACTGGCTGAGCTCAGCTGTTCTTGCCACTTACGGTTTTTTGGTTGTGGCAAACAATGAAACAGAGGAAATTAAAGATGAAAGAGCAAAGGATGTCTGCCCAGTGAGACTAGAAAGCAGAGGGAAATGCGAAGAGGCAGGGGAGTGCCCCTACCAGGTAAGCCTGCCCCCCTTGACTATTCAGCTCCCGAAGCAATTCAGCAGGATCGAGGAGGTGTTCAAAGAAGTCCAAAACCTCAAGGAAATCGTAAATAGTCTAAAGAAATCTTGCCAAGACTGCAAGCTGCAGGCTGATGACAACGGAGACCCAGGCAGAAACGGACTGTTGTTACCCAGTACAGGAGCCCCGGGAGAGGTTGGTGATAACAGAGTTAGAGAATTAGAGAGTGAGGTTAACAAGCTGTCCTCTGAGCTAAAGAATGCCAAAGAGGAGATCAATGTACTTCATGGTCGCCTGGAGAAGCTGAATCTTGTAAATATGAACAACATAGAAAATTATGTTGACAGCAAAGTGGCAAATCTAACATTTGTTGTCAATAGTTTGGATGGCAAATGTTCAAAGTGTCCCAGCCAAGAACAAATACAGTCACGTCCAG
Seq A exon
GTATGTATAATAATGTTTTCTTATCATATGTTCATAAATGTTATACAGCTAGAGAGTATCTATAAACATTAACCTGAGTCAGTAAGTTAAATAGATGACAGATTAAGTCTTTTATTTATCAAGGTGCACAGGAAAAAATAAATATCTTCTCAAATATGACCACATAAATATGACCTAATTACAAAAATCATAGTTAGTTCTGTATCCACTGGAAGTCACTTTCAATTTTAAGATCTTATTTGTTAATGCCAGACCTACTTGCAAGCAGAAGTAGAGAGAATTTCTTGATGTTTTAGTGCATTTAACTTGTCTCTTCAATGAGGTGTTTGAAAACAATAAAGATAAGGCGATGTTCACAATTGTGCCTTGTTTGTTGGAAATCAGTTTTTCTTGTGATTGACTGACTGCCGCTTCTCATGGCTAAAGAGGTCTTTGAAAGATTTTAGCAAGTAATCTAGTTCTTAATCCCAAATATCTGGAGAAAATGGGAGAGTTTACAGATGGAATAAAAGCAGTTTCATATGTGTGCACAAATTTTTGCTTTGAGACCTAGTGGCACAAAAAATATTTTAAGGGGAGAGTTTTAGCATGCCACTAAGGGAAGGTATTCATATTTCTTTCTCTTTTACCTGAAGTTAGAATTCAAGCAGATAGAAGTAGAACCCATCCTCACCATCCAAATTACTTGAATTAACTTTAATAAATACATGTGAAATTCCACAGACTTAATCGCCTACTCCACCCACGAACTAACAGTGGTATTGACTCTCCAAACCTTGGCTTTTCACCTGAGTCACTGGGACCACTGTTGCTGACTGTCTCATACTTTGGAAAGCCATCTCCGCATTTGGACCTCTACTTACCATGAACGTGAGGTTGAAAGGACAGGGCGGAGATCACTTTCATTTAGAGACAGTATCTCAGGCATGCTCCATCCCCAGGGCATCTGCCAGTGAAGGAGGGAAGGGTCATATTTTCAAGGACCTCTATTGGTAATACTCCTGGCAGCCTGCATCTGAATGTACCTGGCACACTGCGAATCCAAGGTTCACCGCTTAGGTGACATCAGTGGGTATACATTAGATTAGATGCTGCATGGCAACTTGTCATGATATGAAGACTATTGTCTATTTTTCTCCTAAACATTTTGGGTGAAATAACTGAATATTCTGAGCTCTAAATATACAGGAATAGATTTTTATGCCTTAGGGTATCTCATATTAAACTTACCTTATTTGTCACACATTTTAATAAAAACTATCTGGGAGTAAATATCTGTCTGATTCATACAGAACTTTGTTAACTGATTATTATGCTTATCCTCAATATAGTCACCTGTTGTTTCTTTCTAGAAACCCAACATGTGAAATAGTGGCTAAATACTTTCCTAGATAATAAATACAGAATAAGAATATTGGTGTGTCATTGAAAAAGATACTTCTTTTTCACTTGAGCTTCTTTATATAGTTGTCAAGTGAAATGAATATGAATTTATGATCAATCCTATGCATTAGGATTTTAACACATCATTTGGAATATATGCTATAAAACCTTCTGACAGTAGAGGCTATCAGCCCCTTTAGGTGAAAGAAAATAGAAGCCTGTGCTTCCTCTGTATGCAAGGAATACAGTTCTAGGAGAGTTAGAATCATCTGATTTTTAGGACCAAGGGATGCAATGATTACGAGAACAAAGCTTTGCTGCCAGCCAGATCTGAGTTAGTGTCCTGGCTCTGCCACTTAAAGCTCAGGTGAAGGTGGGCAAGCCACTGATCTTTATGCCTAAATATCCTCACATGCAGACTGGCAGTAACGCCTACATCATAAGGTCAATGTTCAGATTCAGTGTGAAAATGTTACCCAGTCTGGCAGCATGCCTAGAACGTATAGGTAGGCCTCACTACATAATACTAAATTATTAAAACTGTACTTTTATTATTTTCTTATTGTCGTTTGCTGTTGATGCTGTCATTATTACTACCAACCAAGAGTATATTAGAGGTCCTTTCTGCTTTATAACATTAGGTTCTTCTTGTGAGGCCTTAAGCATTTGCTAAACAGGTTCAAGTAAGTTTAGTAAAGTTTCATTACTGCCATTGATTCAATTATCAAACTGCTTTTGTACATATAAAGAATTCTTCAGATGCATGGTTTCTATTAACAAGATCCAATGCCTTCCTTTTATTTCCCCTTCAG
Seq C2 exon
TTCAACATCTAATATATAAAGATTGCTCTGACTACTACGCAATAGGCAAAAGAAGCAGTGAGACCTACAGAGTTACACCTGATCCCAAAAATAGTAGCTTTGAAGTTTACTGTGACATGGAGACCATGGGGGGAGGCTGGACAGTGCTGCAGGCACGTCTCGATGGGAGCACCAACTTCACCAGAACATGGCAAGACTACAAAGCAGGCTTTGGAAACCTCAGAAGGGAATTTTGGCTGGGGAACGATAAAATTCATCTTCTGACCAAGAGTAAGGAAATGATTCTGAGAATAGATCTTGAAGACTTTAATGGTGTCGAACTATATGCCTTGTATGATCAGTTTTATGTGGCTAATGAGTTTCTCAAATATCGTTTACACGTTGGTAACTATAATGGCACAGCTGGAGATGCATTACGTTTCAACAAACATTACAACCACGATCTGAAGTTTTTCACCACTCCAGATAAAGACAATGATCGATATCCTTCTGGGAACTGTGGGCTGTACTACAGTTCAGGCTGGTGGTTTGATGCATGTCTTTCTGCAAACTTAAATGGCAAATATTATCACCAAAAATACAGAGGTGTCCGTAATGGGATTTTCTGGGGTACCTGGCCTGGTGTAAGTGAGGCACACCCTGGTGGCTACAAGTCCTCCTTCAAAGAGGCTAAGATGATGATCAGACCCAAGCACTTTAAGCCATAAATCACTCTGTTCATTCCTCCAGGTATTCGTTATCTAATAGGGCAATTAATTCCTTCAGCACTTTAGAATATGCCTTGTTTCATATTTTTCATAGCTAAAAAATGATGTCTGACGGCTAGGTTCTTATGCTACACAGCATTTGAAATAAAGCTGAAAAACAATGCATTTTAAAGGAGTCCTTTGTTGTTATGCTGTTATCCAATGAACACTTGCAAGCAATTAGCAATATTGAGAATTATACATTAGATTTACAATTCTTTTAATTTCTATTGAAACTTTTTCTATTGCTTGTATTACTTGCTGTATTTAAAAAATAATTGTTGGCTGGGTGTGGTAGCTCACGCCTGTAATCCCAGCACTTTGGAATGTCAAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAACATGTGAAACGCTGTCTCTATTAAAAATACAAAAATTAGCCGGGCATGGTGGTACATGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGAGAGGAAGAGGTTGCAGTGAGCCAAGACTGAGCCACTGCACTCCAGCATGGGTGACAGAGAAAACTCTGTCTCAAACAAAAAAATAATAAAATTTATTCAGTAGGCTGGATTCTACACAAAGTAATCTGTATTTGGGCCATGATTTAAGCACATCTGAAGGTATATCACTCTTTTCAGGCTATAATTATTTGGGTAATCTTCATTCTGAGACAAACTTAATCTATATCATTTACTTTGCAACAGAACAACCCTACAGCATTTTGGTTCCCAGACTAAGGGAACTAATATCTATATAATTAAACTTGTTCATTTATCATTCATGAAATATAAAATACTTGTCATTTAAACCGTTTAAAAATGTGGTAGCATAATGTCACCCCAAAAAGCATTCAGAAAGCAATGTAACTGTGAAGACCAGGGTTTAAAGGTAATTCATTTATAGTTTATAACTCCTTAGATGTTTGATGTTGAAAACTGCTTTAACATGAAAATTATCTTCCTCTGCTCTGTGTGAACAATAGCTTTTAATTTAAGATTGCTCACTACTGTACTAGACTACTGGTAGGTTTTTTTGGGGGGGGTGGGTAGGGATATGTGGGTAATGAAGCATTTACTTACAGGCTATCATACTCTGAGGCCAATTTTATCTCCAAAGCAATAATATCATTAAGTGATTCACTTCATAGAAGGCTAAGTTTCTCTAGGACAGATAGAAAACATGAATTTTGAAATATATAGAACAGTAGTTAAAATACTATATATTTCAACCCTGGCTGGTAGATTGCTTATTTTACTATCAGAAACTAAAAGATAGATTTTTACCCAAACAGAAGTATCTGTAATTTTTATAATTCATCAATTCTGGAATGCTATATATAATATTTAAAAGACTTTTTAAATGTGTTTAATTTCATCATCGTAAAAAGGGATCATCTCAGAGAGAACAGCAGTATTCTGCGTATTTTTAAAAATGCTCTAGAGTAACATTTGAAGTAATTCACTGTAGTGTATGCCAGTCCTAGAAATAATTTTTTTAATTTCTGGTGTCTGTTTCTAATACACTAACCAAGTTTTCAAAATATATTTACAAAGATGCATCTTTACCCATTATTTTAAAATGATTAAGGAGGATAGTTGCTTCAGGTAACAAGCTAATTTTTCAAATATTAGGCCCTTACAGAACTATTTAGTCAAAAAGTAAGATATTCCTTTAAAATATATAACCCAAAGCTTTCAGTTAAACATGATATATCACAAATACTATTAAAATGTTAAAGAGAAATGCAAATAGCATTAAATGATGACCAAAATGTAAAATATTGTAGATTTCAAAAGCTGTGTCTCTATTAGGTGGGATACCAAATGTAAATGATGTAACTGACGTTGTTTTTTACTTTTTACTTTTTAAAAAAGACTAAAAACGTTTTGATATTATACAATGTATTTGTTTCAGATAAGGTCATTGTCATTTAGTATATATAATTAATATATGTACAAGTTTAAGTAAATTCCTGTGAGTAAAAATGGACTTATCACAAAACATAGTTCTAAAGAAAGGTATATGCTCATATACACGGTGTCCATTAATTTAATGGGAACTAGGTATAACTTCAGGAGAATTTGGCAAATAATTCATTAATCCATGTAAATATTCAAAAGCTTGTTCTATCCACATTATTTCAAGGGATCACTTTATTTTTCATTATACTTTCACAGCACTTTTCTAGTAAATTCTGTAACACAGAAATTCCATTTTGGAATCATTTCATGTTACCAATAATTCTAGACTTTTATAACATTTAACATGTTGATGGAAATAGATTACATCTGCTAGAACCTTTTGCCTTAACTATTCACCAATATATGCTAATATTCATAAATATGGATTGACTGTTTACAAACATTAGAATCTTGTCTTGGTTCCATTTTGATGGCTAATATTTGTTATCTTAATTAAGACTATTTCTGAGGTCATGATTACTTGAAAATATTGACTAAAACTGGGTCCTTAGAAATTCCAGGTGGAGCTGATTTACCTATGACTGAGGGGAAAAAAAAATCAAATTTTACTGATAATAGTAATGCTCCAAATGAATTAATGACACATCTGTTCAATAAATAAAGAGCTTAAATATACAAAACATAAGAAATCTGGGCAACAAAACTTGTGGTCTTTACTTTTGAATAGCTACCCAAGAAAAGGTTTTAAAGGTAAAAGTTATGAGTAATGTCATCACAATAAGCTCTTGTTTAAAATTCTTTTCTTTTATGTATAATTAGGTTTATGTTTCATGTCTTTTTAAAACCTTATAAAAGATTTAATTATCACATCTATTCTTCAATGTGGAAATATTAAATATTGTTGGTTGTAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127951-FGL2:NM_006682:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF029949=Transposase_22=WD(100=84.4),PF0080420=Syntaxin=WD(100=61.0),PF097264=Macoilin=WD(100=54.6),PF053776=FlaC_arch=WD(100=20.0)
A:
NA
C2:
PF0014713=Fibrinogen_C=WD(100=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)