DreINT0138693 @ danRer10
Intron Retention
Gene
ENSDARG00000019686 | si:ch211-236c15.2
Description
si:ch211-236c15.2 [Source:ZFIN;Acc:ZDB-GENE-120709-53]
Coordinates
chr25:21169925-21176221:+
Coord C1 exon
chr25:21169925-21173628
Coord A exon
chr25:21173629-21174645
Coord C2 exon
chr25:21174646-21176221
Length
1017 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATTATTTTTATGATCCACAGAAA
3' ss Score
6.49
Exon sequences
Seq C1 exon
CTCCAGTCCCTCCTGTTCCTTCTCACTCATACACTTCTCGACACATTGAAAAGACCTGCTCACCACAAAGGACACAATGTGGTTTGCTGTGTTTTACATATGGGGAACCATCTTGGCATTTTCTGTATGTGACATCTGCCCAGAAACCTCTGAGGATGCTGCTTCATGGGTAGAACTGAAGCCCCAGAGACACTGCGGGGACGAGGAACACTTCTGCCCTTATCGACTCACCCTCCCTCCTCTCTCCATCCAGCTACCCAGGCCTTTTAGGGAGCTGGAAGAAATGGCTAAGGAGCTGCAGAACCTAAAGGAAGTTGTCAACCAGCTGAGAAGAGACTGCCAGGAATGTAAGGACAGGCACAGTGACAGGAGGGGTGGATGGACGGACCGTAGTGACGAAGAGGAAAGGTGGTATCAAAGTCCAAGGCATAATATCAGTGTTAAGAACACACCAAGTCCTGATGGAGAAAAAGTTGCTCAAATCTTCTCTTCAACCTTACCACAAGGAGACACATCAGAAAGTGAAGGAACCATCAAGGGGTTTGAGAAAAGGCCTAATCATTCAACATTGGAAGTTCAGGAATGGGATATTAAATCGAGGATTGATCTAAACCAAGGCACAACAGATCCAACATCGGAGATGAATAAAGATGTAAAAAAAATTAACCCCTTCCTTGAGGTACCTGAGGATATTTCAAAGGTGCCTACACCTGTAGGGACAGAAAGGGAACTAAAGCGCAGTGGATTAGCAGAACCCTCCCTTCCCGTGAAAAAGGATGATGTACAATTTGTAACCCATGTGAAACAACAGCCAAATGTTCTCAGGGATGGCCATGCAGGGAACGTCAGTGACATTGTGACAGTGAGAAGAAGAGTGCAGAATGTGCCTGATCTGGATAGATTAAGAGATCCTAACATAAGGACAACAGATTTAAGCACATCAGCAGTTAACAAAAAAGTTTTGAACTTTCCTGGGGGAGATAGACCATTGAGGCCAAGAGGTTCCTACATAAACAGTAGAGTTGTCAAAGTTAACAATGAAGATAGATTGAAGAACCCTGCTGTCATGAGAAAAACTAATCCACAAGTCGGGGAAACGATGGGTATGATTCAGCCAGAAAAGGCTGGATTTTCTCCAGCGAGGAGTGGCATTATGCGGGTAAAGGAAACTAGTCCTCATATAGCAAACACAAAATCTGGGACAATCAGAGGATCAAGTCCATTAACAGATGACCAAAACAAACAAGACTTCAGTAGCGTTTCTGGTCCCAAAACAGACGATAAACATGTAAGCCAAGTCACTACAGTTAGAGAAGACAATTCAAGAAACATAAACATAACTGAGATTACAAGACTCCCAACAAATCTGAGGAAAGAAAAGCAAGGTGATGTGAGTCACACGGACACAAACAAATCAGACTTCAGTATTATGAATCAAGCTGGACAGCCAAACACAGTTAAAGAGGAAGAGAAGCACATTGGACTGAGTGAAAGTCTGGTAATTATTAGTAACTCCTCTGTGAATAGAGAGGACTTGCCTTCCCCAGGAAGACAGGTGGAAATTGAAAAATATCTAAACCCAATCACAAAAAGTAATAATGGACAAATTGGTTCCAAAGTTTTAGATAAGGCTGACAGAACTCTTAATGCAGGGACAGTTAATCCAATGTCTCCAGATCTCACAGATAAGATACAGCCGGAAACGTTCATCGTAGGGACAATTGAGGAAATGGGTTTTAACTCGTTAAATGCAGAAACTCTAAAGATAGACATCCCAAGCCACAGTGAAGCTACATTTTCAGAAGATCTTGTGAAGCCCACTATTGTCCCAGCGGTAAAGAGCAAATCAATAAATGGCAATGTGAGAATGACCAGCAGGTTTAAATCACCCGTGAGAGGCCACGGGGCAAGAAGATCTTCAATAACTCCACTCAAAGCTGTGCCAGAACAGCCTCAGAACAGCAAGAAAAACATCAGCATGACACATGAAGTGAGACAAGAACTAAAGTATGTAATGCCAAGCCTTCAAAGCAACTCAGACACCACTGTTATTTCACATACAGGCCCCAAACTGAGACCTAACACAACAAGTAAAATGTCAGCAAACAGAAGTGTTGGGGAACCTTTAAAGTTGCCTATCCCAGTCAGAAATGGACATGTTCCCCGGAAAAATGTCTCTGGAATACTGAAACCAATTTATACAAGGAGGAAGCCAAACTTTCAAACTGAGATGAACACAAACAGAGGCATCAAGACAAAGGTAAGCACAAGGAATCAATTTTTTAGCCCCACTGGTGCAACACCTACTGTAAGAAGAGGTGAAATCAAACACATCCCACAGGTAATAACATCAAATGTACTGGATAATCAGCAGTCGACAAATAACATTACAGAACCAAAATCACAACCAGAGTCTCAAAATCCAGGTGACATAAGAGATTTGGATAAGCTTCAAGAAGCTATGAACAGACCTGGAGACAACAGCGAGATTGTGTTTATCTCAAATAATGAAAACCGTTCACAGGATCCTAACACAATGCAAAGGGGCACATCAAATTCACCAGCTGGGGAAAAGGAAGGAAAGATCTTTAGTTTAGGAGGTGCCAGTATTAGTGGTCAAAATCCATCTGAAGAGGACAAAATCAGAAGTGGGAGGAAAAGGCCAACCGCATCCACCTTAAAGAAAGAGTTACCCAAGGAACCAGGTGCATCTCAGTTTATAACATCGAATGTCTCTTTTACAGACATGGAGCATGGAGACAGTACGAAAAACATTCACACAGTGACTAACACACATGTTGAAAAGTCTAATAACCCCAGTCAGGATACACCCAGAAGTTTTGAAAATACTGGACCGGCACCAAATGTGAGGTCAACCGTATTGCATAATCTCTGGATAAAAAACAACAATACAGAGTCAAAATCCCCTCCAATCTCTCAAAATGCAGCTAATGTGCAAGATTTGGATCAGGTTCAACAAGGTAAAACCCATGTTAGAGACAATAGTGAGGTTGTGTTGATACTTAACACTGAGAATCCAAACATACAGCAAAGTGGAGGATCTAATGTTCCTACTAGTGGAACAGAACGCAAAACATTTAGTTTGGGAACAGCTGATAAATTGGAAAGAGGAAAAAAAGGGACAAATACACCAACCCTGAAGAAGAAAGAGTTATTTAAGGATCCGGGAACAACACAATTAATAAACTCAACAGTTTCTTTTACAGACATGCAGCACAGAGATAGTACAAAAAACACTGGTTCAGTGACAAATGCGCATGTCGAAATGCCTAAAAACGTCAGTCGGGATACACCCATTAGTTTTGAAAGTATAGGAGCAACAAAAGAACTGGAACATATTAAGCTTAATAAAGACAGAGTGGATGAAATCCCTAAAGATGTATTATCTAACCCAAACACTGTGGACACAGCCAATGGTTATAGTGGAGAGAAGTATGCAATTCCAGTTGTTTTGGAAACGCTTACAAATACTGAAGAAATCAAGGGCTCAAAAGTTTTCTCACTTAGCCCTGAGGACACAGCTGAGGGATTTAAATCCCATGCAGTCAGCGATGAGGTAACAGAGAGAGAGAAAGCAGAAAACAAAATCCACAGCACCTGCCTTGGTAATTGTAACACTACATCAACTCCACACTCACAACCCAGTACAAGCCAGACGAGGACTCCATTGGCCCCTGAAAGAG
Seq A exon
GTGAGGAATTTTCTTACCCAACACATGTTCTTAATGTTTATTTAAAACATTTCAAGTTTAAAACATTTCAAGTTAAAGGAGTATTTGCTCTTAATTCACACTCAAGAAAGCACTCCAGAGTGTTTGGAGAATGGCAGCAGTGCATGTTTATTTGACACGAAGCTTACGGTATAGTGGAATAAGTCACAGTGACACTTTGTATAGATTGCACCAAAGGTTTCAGGAGAGTTCAAATAGGGACACCTCTTTAAAAACAACCACAGGTAAAGGGAACTCAGACAAACATTACAAAGAATCCTGTGACCCCACAATTTATCTTGGTAGTGTGATAGGATTGCACATTATCCATAACAGGGATAAGTGGACTTGGATCGTCATCTGAATAGCAGATGTTGTGGTTTTTGTGAAGAGGACCAGCTGTAGGCGTCATCTTTTGTCTGATGTATCAGGATGTGGTGTCTTTGTTGAGCTTGATTAAAGGTTCAAAAGCTCAAACAATTTTCAGCAATGCATGATTAATTACAGACAATACTGTGCATTTACTCTTGTATTGACTGGAGACCAAAATTTATCTTAGTGTTGCTTAATGTAAACTTATGAAACAATGAACAAATAAATCCAGGGGGTCAAAACAAAACCCTCTAAAATATTAAGTTTAGTTCAGAGCGCAGCTTTGTTGTTGATGCATCATCTTCTTTCTGTTTTTATTTAAAAATTCATATGATCCAGAGATTCATCTGAATGTTTATTTTTCCAATTTCAACCCTATTGGATTTATTTGTACTGAACTTTCCGCAATGTTCCCACAAAGTATTTCGTGAAGTACTTTCACAAATAAAAATGCTTTTGTAAATGTAAACAGCTCCTCTAGTTGTAACATGACAACAGCAAAGAAACTCTCCCTGTAAGACATGCACATAAATAAAAGCATGGAGATTTATGTTGTTTACACACAGTAATAGCATATTTCTTTAACAGTGGGGTGAGGTAACCTCAAATTATTTTTATGATCCACAG
Seq C2 exon
AAAAAAGACCTGCTCAAGACTGTGCTGATTACATTACGAAATCTCGAAGGAATGGTGTATACAGACTAACGCCGCGACCAAAAAACACTACATTTCCTGTTTTCTGCGACATGGCGTCCTCTGGCGGAGGTTGGACGTTGATTCAACATCGCTTTGATGGTAGCACAAGTTTTAATCGCACATGGGACGAGTACAAAAATGGATTTGGGAAACTAATAGGAGAGTTCTGGCTTGGCAATGACAAGATTCACTTGCTGACAAAGGCGAAAAACATGTCATTGCGAATTGAAATTGAAGATTTCGAAGGGATCAGAGAATACGCCCAATATGACCACTTCTACATAGCCAATGAGAGCCAACAATACCGCCTGTCCATAGATGGTTACTCTGGTACAGCTGGCAATGCCATGCAATTTAGCAAAAAGTACAACCATGACCAGAAGTTCTTCACCACTCCGGACAGAGACAATGACCAGTATCCCTCAGGAAACTGTGGAGCCTATTACAGCTCAGGCTGGTGGTTTGATGCATGCATGTCTGCAAACTTAAATGGGAAATATTATCAATCAAAGTACAAAGGGGTACGTAATGGAATATTTTGGGGTACATGGCACAACATTACAATGGAATATTACCCAACTAATGAAAGACAATCATTCAGGACTGTTAGAATGATGATAAGACCTACAAACTATGCAAACTAATACGAATAACAAACTGAACTAAATTAAGCTATCTTTTGAATCATAAAGTAACTGCTGCAATAATATCAGATTTCAGTGTGGTGTCAGAAAATTGTTTTAGTAAATATGTTGTTTATTAAGCTGTAAACATTAGCATTGATATACAAAACTGAGCACTTTTGTGATGCTTCGAAAATACTGTAGTGCATAAACAATAAAAACATGCTTTTACAGATTTAGCTGTTATTTTGTATATTGTGTATTTTTTTTTTTTTTAAGTCTGGGGCAGTCCATGACTGTTTACATGGATATATGCTCTTTTTTTCTCAATGCAAACATTTTACGTTGAATAAAAGCATCTGTAATTTTGTTTGTTTTATCATTATTAAATTTTTTTAATGGAAACTAAGTGCTATTTTCCATCATTATAAGTCAAAAAGGGGTTTCAAGCATTTTTTTCTTTTAAATAAAAATGTGTCCTATTTAATAGTTTAAAAAAAACACTATTAGACATTTTTACAGAAGATACCTACAAAAATGTCATTGAGTTAAACAAAAAAATCGTTACAGGCATATTTAGATCAAGAATGATTCAATGACATTAAAATAATTTTAAATATTCACACTTAACCAATATTCTTCTAACCAATGGGTTTTACTTTTGCCTATTTGTCAAGACGTTTTTAATACATAAAATATATACTCTGGTCAGTTTTTTAAAGGTCAGAATAAGCCAGATTAAGTTTGCGGTTTCAGTTTTACATAAATATGTGTTATGATAATGAGGATGGAACTTGCTTTATGTATGTATAGATTTTCTTTTTTAGACACTATAATTGCATTTATATTATAGGTGGGCACAGATTCATTTTTTTTATTGAGATTAATCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019686:ENSDART00000152015:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=WD(100=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCATTGGCCCCTGAAAG
R:
TGGGCGTATTCTCTGATCCCT
Band lengths:
348-1365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]