GgaINT0108388 @ galGal3
Intron Retention
Gene
ENSGALG00000008306 | Q5F3I1_CHICK
Description
NA
Coordinates
chr1:13742634-13748629:+
Coord C1 exon
chr1:13742634-13743269
Coord A exon
chr1:13743270-13746148
Coord C2 exon
chr1:13746149-13748629
Length
2879 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
AATCTCTGTTTTTCCACCAGTTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
ATACTGCGAGTTTCTCTGCAAAGATGAAGCAGCTTGTTTACTTAGTCTTGCTTAAGACAGCTCTCCTGGCTTTAACAAATGTGTTTGCAGTTATTTTAGAAGAAGAAAAGGATGCTAAGGAAGAAAAAACTACTGGTGCTTGTCCTATAAAGCTCAAAACTAATGGGAATTGTGATGAAGGAGAGGACTGCCCGTATCAGATCAATCTGCCGCCAATGACCATCCAGCTACCCAAACAATTCAGACTGATTGAGAAGACTCTCAAGGAAGTACAGACCCTTAAAGAAGCAGTAAACAAGCTGAAGAAGTGTTGCCAAGACTGCAAGCTGCAGGCAGATGACAACCAAGAAAGAGACAGCAGTAATGAATTCCTGCCACCTAATACAGAAACTCCAGCAGAAATCCAAGATAACAGAGTAAAGGAACTGCAAAGCAAAGTGAACAGAATGGCAACCAGTCTAAAAAATGCAAGGAACCAGATTCAGACACTGCAGGGCCGTATAGAGAAGATGAGCCTCCTGAATATGAACAATGTAGAACATTATGTAGACAGCAAAGTTGCTAATTTGACGTTTGTTGTGAACAGCCTTGATAACAAGTGTTCTTCTCAGTGTCCAGCAATGCAGCCAAGCCCTG
Seq A exon
GTATGTAACCTGTTTGTTCTTAATGCCTGCAACATAAGCTTTCTGTGCATCTTACACATACTAGGTAAAGAAATGAAATATATGTTAAGCAAATATCTGTACTTCTAACTTTACAAAATGAGTATTTGCCCATTTGCGATTTGTTTGTATTCCTGTGCAACTTTCCAGCTGCCACTAGAGGGTTACTGAGAGTTGCAGGTGTTCAGTTCCTGCTATGGCTGTTCCTTATTACGGGACCTAAATCACAACATTTTAAAGGACATTTTTTTTCCCCATTCTAATAAGCAAACATGAAAAAATGGAGGTATTAGTTTACACCATTCATTAAGGATATAAAATATCAGTGAACTACCTGTATTTTCTCTTCGGCTCTCAAGGGGCAAATTTCCTCCTTAGGTATGCCTGATAATACTGCATGCTTTTTTCAGTGTGAAACTGCAGCTATTCTGAAGTGGTCTGCAAGTCATTATTAAATATCAAGTGAATCCGGTAAAATGTTTAGTTCTTAAGAAATGGATAGTTTAGTTTTCTGACATCACAGCAAATATCAGAAAGGCTTCACTAAGAAAGCTTCTTAATTGTACTTATCAAGTGGATAATATATATAGCCCCATTTTAATGCTTAACAACTGCTATTTATTTCACTTTTTACCTGTTCTAATTAAAATAAAGAAAAGAATAATATTTCTTCCTGATGTTCACCATTCATAAAGTATGACTAAAATATTTTTGCAAAGTCATACAGTTTTCCTATAACGTATAAGAACTTTTGCAAACAAGAAATATCCACTAGATTGTAAGTGTATTCCAGCTTACTTAGATATCATACATGTGAAGATAGGGATCTCTACAGACAAAACAGAGAAATAACAGAACGCACTTCAGTTTTTAAGTCCCTGTGGTCTTGTGTCCACTGTGAAGCTTGTGCAGATGGTACAGTGTGTGTACAGTTGAAATTCCCAAAAGAGCAAAAAGAGCAAATGAATAATAACGAAGGTAATGCTTTAACTGTATCAACAACCAGCTTCAAACAGATACAAATCAGTACAAATTAATTACTGTAATTCAGATAGAAAACATTCACAGAAAGAATGAATGGTATCCAGTCTATTGATAATGGGCAATGAATCACATTCAAGCGTGGTAGTTCATGATGGGCTAAATTCATTTTAGATGTTTCTCTCTCATACTGAGCTGTTGGGTACTATTCATAGCACACAATCATGTAGATGTTCCTTACATTTTACAGCAACTGATGTTATAGATAGAAAACTAGCTACAACTTTTTTCCCACATAAAAGTTTTTCCTACCTCTTCTGAAAATAGCAACAAAACTTCCTTTAAATAGGAGTTTAATTGAATTATAAAATGCTTTTTAGCTGAAATTAACACTCCTTGTCAATATCTGCTCTTAAATTTAGTCCAGTAAAGATCTTACACAAAGTTCAGTGAAATAAATGAGAATCTGTTGTGAACTCAGATTTGGTCTTTAAGTCTCTGATTCCTACACTTTATGCTTTCATAGATGTCCAGTTTTCTGCACTAGCAAACAAGGAGTCCTGAGCCTCATCCCTCACTGCAGCTTGAGAACATTTGTCCCTTACAAAAAGTAGTTGTACTGTTTAACTTTCCCTGTAAAAATATGAAATTCAGTTCTACAGTTGAACATATTCCTAAATTCAAATCTACAATACAGAGGAACAGTGTCTAAATGGTTTTGATTCAACTCAGAATTGACAGGTGGAAAGGTCTCCATCATTTGTTTAGGAACATTTAGGAACAGTGCATTCTGAACGCTATTGAACACAATGTCATTACTAAGTTAGTAGATCAAAAATGGCTTTTTACTCTGCAGGAAACATCTGGGGGTGTTTTTCTTCTGAATAAAATATATCATTGAGAAGGGGAAAAACTGTGCTAATGGCAGATGCCAAACCTTTTTCCTTACTTTAAGGCCAGCAAAGCCACATACACAGGAAAGCACATAACTTTTCTAACTTTATCTTTCTAGGAATTGCAGTATTACTACAATAGATTAGATAATTCTATAATATTTCTCCTGCTTCCTTAATTATTGCAATATTAACACATGAAAGATTCCTAATGATGCAGTGTTCTGAATCAAACTGGCTATTGAAAAACAGCCAGATTGAAGTTATTCCCATATGAACAAAGCTTTTTCTCTGACACATTGCCAGATAAAGATTTGAATTATAGACACATATAGTGTGTCACATATAGACATATAGTGTGATGGTATACAGTGAAATATTACAAAAGGAGCAAGGTTTAGAAATAAGAAGACACTAGTATGAATTTATTGAAGATGATGAAAGGATGAGGAACAGGGTAGAGAAACAGATTAAAATGGAACCCAACCAAGTGACCCTCAATTGGCCAGTTTCGATTTAAAAAGAAACAACATCATTTAAATGGTTTCTGGTAGTCATTTGATGCAGAGATCCTAGCTGATATCTATTACAGAATAAACTTGATGGAGAAAAAGTTTGTTCCTAGAATGGAAACTGTGGTAACACTATTTCCTATCTAGAAGTCCAATCCAAAAAACTGAACTTATGCTTATACCTCTTCCAAACAGATTTCTTGGTCTTCACACATTAGATGTACTAAAAGTAGATCCCAGTTCAAAATCATGGCAATGTAACAGACAACTTTAGTTAATATTTGACTTTTCTTATTTAACCATAGCTGTGGAAATAATGAACTTGGTAAGAAAAAGAGCCTATGTGAAGAGCAGATAACAACAGAGTCTGCATAGCGTTTAATATGTTCTGTAGAGCACATCAGCCTGGATAAAATTTTTGCTTGTTTTTAAATTGATGCTGTGCTTAATCTGACAATCTCTGTTTTTCCACCAG
Seq C2 exon
TTATTCAAGTAATGCAGAGAGACTGTGCAGATCATTATGCAGCAGGCAAAAGGAGTAGTGGTATCTACCCAGTTACCCCTGACCCCAGAAACAGCACCTTCCAAGTCTACTGTGACATGGAAACACAAGGAGGCGGCTGGACAGTGCTGCAGCGGCGTCAGGATGGTAGCACTAACTTCAACAGAACATGGAATGAGTACAAACACGGCTTTGGAAACCTCAGCAGGGAGTTTTGGCTGGGGAACGACAAAATTCACCTCCTGACAAAAAGCCAGGAAATGCAGCTGAGAATTGACCTTGAAGATTTCAATGGTATCAAAGAGTATGCCAAGTACCAATATTTCTACGTGGCCAACGAGTACCTGAAGTATCGTCTCAGCGTTCATGGCTATAGCGGCACAGCAGGAGATGCTCTCCTCTACAGCAAGCATTACAATCATGATCAGAAGTTCTTCACAACTCCTGACAAGGACAACGACAGGTATGCATCAGGGAACTGTGGCGCATTCTACAGCTCTGGCTGGTGGTTCGATGCATGCCTGTCTGCCAACCTCAACGGCAAGTACTACCACAAGAAATACAAAGGCGTTCGCAATGGAATTTTCTGGGGTACATGGCATGGTATTTCCGATGATACTCCCAGTGGATACAAGCAATCCCTTAAATCAGTAAAAATCATGATCAGACCCAAAAGTTTTGCACCATAATTTTAAACATTTTTTCTTAACTAATTTGCATTGGATTGCACTCAAGATCGTACTTACTCAGTATTATATGCAGAATTCAAATATTCAGTTTTATTTGTCATAACATAGTTCTAGACAAGGTAACATATTTCCACATGCATTTTTAAAGATGGTGTTTCCCGTATAATGTATGAAAGACAACAGTTGTTGCTAAAACTTAGCATAGGTTAAGTTGTGGTATTGTAATATAAATATTCTAAGCATTGCTTTTGGTGCTTTTGCTGTATGTGATACACCTCCTACAAATTGTGTCTGAATGAACACCTGCATTTTTACCTGGATATAACTCCGAGATACCCTGATAACACACTAATTTGTTAAACATTTAGCATGAAACATTGTAACTCTGATACTGCCCAACACTTTGTATTGTCTTTCCTTCACAACCTCAAAGATGTACTACAGGAATGTCAAAATAAATTAGGAAAAGTAAGATACGTTATTATTTTAAAAGGAGAAGGGAACAGAGGGCCACGTGATTAGCTCGGACACACAGAAAAAAGCTTGAGGAAAACTTAGACTGTGAATATGGCTCCTCAAACATTATTCCCTTTGTCAAAAACTATTCCAACAAGCTGGTGAAAGAATTGGATAAAAGCAAGTGGCAATAACACATAGAGAACGTAATGAAAGATGACCTTTCATGCTTGTTTCAGTTCTTCTATTCAAGCTCAATATCCTTTCCATCTTTTGTGGGAGAAAGTAAGTTTCGTATAGCTTATCTCAGATTTCTATAGGGGAGCGAACAGGTAGGAAGAAGACACGTCAAGAAGAATCCATGTGTTTGTATTAATCCCTCTAAATACATACAAGAAATACATTTTGCTTTCTTTTCTGAATCTTTTAGGTGAGCCAAACATTGCAAGACGACACCCGTAGAGACTCAATCTCTTATTTAAGTACTTCTCACTATACACATAATTAGGCCTTAAATTATATATAAATTATATTTTGTAAAGCAATATTACATTCTCCCCGTTTTCTGAATACTGCTTTTGCAATCAAAGAAACATGAGTAATCCACTGGCCATTAGACGCAGAAAAGAGAATATGCAAAGGGCTTTTTTCTACTGAAACGTAACAAAAGAAACAATGCACTTTTCATATACTTCGGGAAGTGCAATTTAAAGAAACCATTCTTATATTTCACACTGTAGATAGCAAGCACAAATTTGCCTACACATACCTATTGTCTATGCTAGAAAGGACATGTCTATAATTACAGTGACTAATATTCTGAGAGGAGACGTCAATTATCTTAGCATGAGGTATTTTGCTATATAGCTAATAGCAATTCTCAGATGCAGATAAACTACACAAAAACTGTATTTCTTTACTGGTAAAAGTATGGCCTTTAGTAGCATAGCATTTTTTGCCATAAGAGCCATTTGTTGGTAATGCTAAACAACAGAACTGAGCTGACAAACCTATGAGTGCACATCTAGCCTAAAACTTTACAAATCAGACCGTAATTGTTTTTAAGATAATATCCAGAACTATCATGGTTACAAGCTATGGATGTCAGCAAAAGTGGCAATTACTAAATAGCAGAGTATTAATATATATATTTGAGAGAGTAAATACTTTGAAGGATATTTCTGTGTGAAGTGTAATTTGGGTTATTGTATTTCAATTGTAAAGACTAATGGAAGATTTTAATTTTAAGATGTATAACCTGTGCTTGAAAATGTTTTGAAGTCATAGAATATTTATTTTGTGATAAAATTGATTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008306:ENSGALT00000013522:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF053776=FlaC_arch=WD(100=17.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=WD(100=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]