MmuINT0064365 @ mm10
Intron Retention
Gene
ENSMUSG00000039899 | Fgl2
Description
fibrinogen-like protein 2 [Source:MGI Symbol;Acc:MGI:103266]
Coordinates
chr5:21372642-21378374:+
Coord C1 exon
chr5:21372642-21373308
Coord A exon
chr5:21373309-21375253
Coord C2 exon
chr5:21375254-21378374
Length
1945 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTCCTTCCTCCCTCTTCCAGTTC
3' ss Score
12.38
Exon sequences
Seq C1 exon
GGAACTCAGAACGCCTGAGTCAGGCGGCGGTGGCTATTAAAGCGCCTGGTCAGGCTGGGCTGCCGCACTGCAAGGATGAGGCTTCCTGGTTGGTTGTGGCTGAGTTCTGCCGTCCTCGCTGCCTGCCGAGCGGTGGAGGAGCACAACCTGACTGAGGGGCTGGAGGATGCCAGCGCCCAGGCTGCCTGCCCCGCGAGGCTGGAGGGCAGCGGGAGGTGCGAGGGGAGCCAGTGCCCCTTCCAGCTCACCCTGCCCACGCTGACCATCCAGCTCCCGCGGCAGCTTGGCAGCATGGAGGAGGTGCTCAAAGAAGTGCGGACCCTCAAGGAAGCAGTGGACAGTCTGAAGAAATCCTGCCAGGACTGTAAGTTGCAGGCTGACGACCATCGAGATCCCGGCGGGAATGGAGGGAATGGAGCAGAGACAGCCGAGGACAGTAGAGTCCAGGAACTGGAGAGTCAGGTGAACAAGCTGTCCTCAGAGCTGAAGAATGCAAAGGACCAGATCCAGGGGCTGCAGGGGCGCCTGGAGACGCTCCATCTGGTAAATATGAACAACATTGAGAACTACGTGGACAACAAAGTGGCAAATCTAACCGTTGTGGTCAACAGTTTGGATGGCAAGTGTTCCAAGTGTCCCAGCCAAGAACACATGCAGTCACAGCCGG
Seq A exon
GTAGGTGTAATGAGGGTCATACAGTTTGTTCATGAAAGCTGTATAGCCAGATAGTGGCCATAAACATTAACCCGAGGGAGCATAAGTTAGTCAGACTTTCACCTGTTAAGTTATGGCAGGAGAAACAAGTGTTTTCTCAAATGAGACAACAGAAATGGTAAATGATCCACGTACAAAAATCCTATTAGTTGTACTCGTTAGAGACCGTCACTTGCAAGTCTCTAGACCTTCCCTGCTAGGTCGACCAACAGACGAGCAGAAACAGATTCCTCCCGGAATCTGAACACATATTTGAACACAGGACAGGTATGGCAAGGTTCCTGGCTCTGCTTGCTTAGGTCCCTGGGAATCAGATCTTGGGTGGCTGATGGGCTTTATAAGGCTTTCACAAACAATCTGCTGTGCTAGGTTCTCAAATATCTAGTGAGAATGGGAGATTTTTATACATGGAAGCATCTCTCCTCTCTCTCTCCTCTCTCCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCCTCCCTCCCTCTCTCTCTCTTTGTGTGTGTGTGTGGTGGGGATGAGGACACGTGTAGAACTTCGGGGGTTGAGACTTAGTGCATATGCATCCTCACCATTCCAGTTAGTGAATGTTAACACTATTTAAGGTCACAGACCTAACAGCCTTCTGTGTCCGGATTCCTGGATTCCTAGGACCTTTGTGGATGGGTTGCCACACCCTCTGTGTTCATCCTGACTGTGAGGTCGATGGGACATAGTAGGGATAACTTTCATTTGGAATCTCTAGAGATGGTAGGTCATCATGTCATAGAATGTTATCACTAATGACCAAGATAGACACTCATGTTTAAGAGACATCACAAGGTGTATATTAAATATGACATGGCATATAACTTGTAATGACACAAAAATATTCTGTTACCTACTTTTCTCCTAAAAGCTTGGGACTCTCCAGAGTTCTAAATACATGCAAACAGATTATTGTGTTTTACAGGAATCTTATATTGAACTTTCTTTACCTGACTCAAATTTTATTAAAATTAACTGGGAACAAATAGTTGGTCTCTAATCTCTACAAAAACCACCAAATGATTACACTGAGCATAATTATAATCACCCTGCTGCTACGTCTAGAAACCAAACTGTGAAATATTGGCTGACTGTATACCTTCCTAAATAATAAATTCAGGATAACATTGCCATATTATTGGAGAACCCCCCCCTCCCTTTTAAAACTGGAATCATTTTATGTCAATCTCAGGTGAAATACGAATGGGTTTCAGAACAGTGCTGTGCACTGAAGGCTGACATTTAGAACATATATAACGATTTCTGTAAAGTCTGCTGTAACAATTGCTGATTGTATCCTAGGAGACTTGGACTCCTCTCAACGTTAAGGCAGAGGAATATAATGGTTATGAGAGTAAAACTCTCTGTCAGGTACATCTGGCTTTCTGTCCCAGCTCTGTCACTTAACACTTAGTTGCGGTGGGAAAACTCCCTGATCTTCCGGGAGACTAAGTAACTGTATAAGCAAGCTGGCCGTGATATCCACGTCGTAAGGCTGCTGTGTGGGTTCAGTGAAAACTGTTACAGTGATTGGCAGAGTTTCTGGAGGTCATTGACCCTCATTAAACCTTGCATACACTTATTCTTACTACTCTTTGCTGTTAGTGTTGCCACCAGGATTGCCATTCAAGGCAGTCCTGTATACTTGATAACACCAGTTGGTTCTGAGGCCTTAGTTAGCATCTGTTAGCCTGGTTCAGGAGAGTGTATCAGAGCCAGGTTCCTCTATCACATAAACTGTAACGCAAGTGAATTGTCCAATTGCTGTTGAGTCTGAGAGTCCTTGAGGTGCATAGCTTTGACTAATAAATCCCCATGCTTTTATGCTTTTCCTTCCTCCCTCTTCCAG
Seq C2 exon
TTCAACATCTAATATACAAAGATTGTTCCGACCACTACGTGCTAGGAAGGAGAAGCAGTGGGGCCTACAGAGTTACCCCTGATCACAGAAACAGCAGCTTTGAGGTCTACTGTGACATGGAGACCATGGGTGGAGGCTGGACGGTGCTGCAGGCTCGCCTTGATGGCAGCACCAACTTCACCAGAGAGTGGAAAGACTACAAAGCCGGCTTTGGAAACCTTGAACGAGAATTTTGGTTGGGCAACGATAAAATTCATCTTCTGACCAAGAGTAAGGAAATGATTTTGAGAATAGATCTTGAAGACTTTAATGGTCTCACACTTTATGCCTTGTATGATCAGTTTTATGTGGCTAATGAATTTCTCAAATACCGATTACACATCGGTAACTACAATGGCACGGCAGGGGATGCCTTGCGTTTCAGTCGACACTACAACCATGACCTGAGGTTTTTCACAACCCCAGACAGAGACAACGATCGGTACCCCTCTGGGAACTGTGGGCTCTATTACAGCTCAGGCTGGTGGTTTGATTCATGTCTCTCTGCCAACTTAAATGGCAAATATTACCACCAGAAATACAAAGGTGTCCGTAATGGGATTTTCTGGGGCACCTGGCCTGGTATAAACCAGGCACAGCCAGGTGGCTACAAGTCCTCCTTCAAACAGGCCAAGATGATGATTAGGCCCAAGAATTTCAAGCCATAAATTGCTAGTGTTCATCTCTCTGGGCACTCACTATCTAAGAGGACGATGAATTCCTTCAGCCCTTTACCATATGTCTCAGTTTATATTCCTTTCCTATGGCTAAACATTTCCTTTAAAGCTTTACAGCTTTTAGAATAAAGCTGAAAAGATCTAAAAAGACTCCTATGTTGCTGTTATATGAGGAATGCTTGAAAGCACTGGAAATATTGACAATTATACATTATAATTGCAAAACCTTTCATTTTTATTAGTTGAAAAGTTTCCTAATATTTTTATTATTTTTATAATAAAAACTAAATTATTCAGCAAGCTAGATTCTATATACGCAAGTTTTATTTTCACTAGGGCTAAATATACACATTTGAGAATATACCAGTCCTTCCAGGTACAACTGAAAGCCAAGAACTGTAGTATTATCTTTCGTCTAAGAAGAACTTAAAGCATTTTAGTTCTCAAGAAGAAGGGCAGGGATGGGATTGGGGGCCAGGGACAATATGTATAGCTAAATGTATTCATCTAATGCAAAATATGGCATTAAAATACCTAAAAATGTGGTAGCATAATATATGTCTCTTCCCTCTCCAATTGAAAAATAATGTTACCCTGTAGACTTTGGTTTAGTGGTAATTCACTTACTGTTTATAGCCTGTTAGACCGCGATACAAAAGCTGCTTTATCCTCTCCCTCTGCTCTCTGTGCACAATGGTTTGTGATGTAAGGTGCTAGACTACTGTAAGGTTTCCTTGGGGAAAGGCATGGTAAGGGAAAACACACTGGTTTATATTTTGAAAGCCAATCCTAATCCCAAAGCAATACTGTTGTCGAGGAGTCAACGTTCTAGGAAGCTGACTTTTCTAGAACAAATGTATTTATTAGGATGAATTTTGGAATTTTAGTTTAAATATTATACATTTTAATCCTAAGCAGTCAATTGCTTATTTCATTCTTAGAAATTCAAAGAATATATACAATTTTAGCCAAATGTGAGTCCCTGGAATTCCTTACTTGTGGATGTCAAGGGTCACATTAAAAGGCTCTGGGGGCAGTTTCACTCACTTTATTCTTGTGAAAAGGGGTCACTCAGAGAGAAACAACCCAGCCGCACACTTAAACGTGCTCTTGGGTGGAATCTGAAGTGCCGCATGCAGTCAGTCACGTGGAGTAACTGACTGTACAACATGCACTGTCTAAGCAATAACTTTGATCTTTAAGTTTTGGTGTAGCTTCTAATATACTAACCAAGCTTTTGAAATATATGCACAAAGATTCCACCTTAGTTATTTTTAAAACATAACTAGGGAGGATATTTATTGTCTTGACTACTTAAACTTTCAAACATGTAGCCACTGTAAAAAAAAAAAAACTTTACAAAGAGCAAGATACTATTTTTGAAACATGCAACATGAAGTTTTCAGGTGAATACAGTGACAACTAAGCTATTAATAATATAATTAAATTGCCAGCGTAAGCTAAATGCATGCTGAATTAAATGACCAAAATATAACGTAGATTTTAAAGCCTTTACCTACTTGGTAAAACAGTGAATGTAAGTGGCAGTAACCAATCTTATTTCTTTTTGCTTTTTAAAAAAGACTAAGAAGATTTTGATATTATACAATTCATGTGTTTCAAATCCTGTTTATTATATGTAGCCATATAAGTCTAATGACATTTCCATAATGAAAATTGATTTACCATAGCAAAAATACTATGTGTTCATCCTGAGTGTGTCTTTCTCAGGGTAACAATGAATCCATGTAAATACTTTATCTTTGCACTTCCAATGGATCCAAATGTTGTTTTCTATTATAGTCTATGATATTCTTCTAATAATTCTTTAACACAGAAATTTATTTTTGAATCATTTTCTGTCACTCATTTAAAAATATATTGTAGACTTTGATAATCTCTAATCTGTTTATTGAAATAGTCCTTAGCCTTAACAATTCACTGATATATGCTGATGTTCATTAATGTACACTATTTGCCAATATGTATTTTTAGAGTCTTGGCTTCATTTGGGTGGCTAGCACTGATCTTAATGATCACTTTATTGCTGAACATCATTATTCTTTAAAAATGCCAAGTGGAACTAATTTCTTAGGAATCCAGTTGATTTGCCTGTCACGAAACGAGAAAGCCATCTCTCTGAAAAGTAGTAACGCAGCAAATGTCCTCAGTTCTCTGGTGGACAGAGCTCGTGTGCGAGGCTCAAGGAGCATTAGAATCCCAGGATGGGCTGGACCTGGATTTTTCAGTAGCTGCCCCTCACTCTTCGATAAGTTTTCAAGATAGGTGGATATATGCAATTTCCATGAACTCTTGTTTAAGATTTATTTTCATTGATGTATAATTAAGGTTATGTTTAATGTTTCTTTAAAGCCTTGTAAAATAAAAGTTAATCTTTATATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039899:ENSMUST00000035799:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF097304=BicD=PU(93.6=73.7),PF041569=IncA=WD(100=52.5),PF0157614=Myosin_tail_1=WD(100=67.7),PF029949=Transposase_22=WD(100=64.1),PF060097=Laminin_II=PU(94.4=42.9),PF053776=FlaC_arch=WD(100=17.7)
A:
NA
C2:
PF097304=BicD=PD(5.8=3.8),PF060097=Laminin_II=PD(4.4=1.7),PF0014713=Fibrinogen_C=WD(100=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGAGGGAATGGAGCAG
R:
GGTAACTCTGTAGGCCCCACT
Band lengths:
344-2289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types