HsaEX0013761 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7406532-7430388:-
Coord C1 exon
chr12:7430206-7430388
Coord A exon
chr12:7428812-7428857
Coord C2 exon
chr12:7406532-7406852
Length
46 bp
Sequences
Splice sites
3' ss Seq
AATTTATTTATTTCTTCCAGCTA
3' ss Score
7.51
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
Exon sequences
Seq C1 exon
GAAGATACAAAGTTCTTTAATTTCTAAGTGATCTGTCTCTTACTGGCTGACAGAGTTCTTACAACAAGTGAATAATCTGAAAGAACTTAAAGTCTTGGAGTAGTTCAAAGTCAGGAAGAGTACTTAGAACCTTCTGTAAAGTCTTCTAATTTCTTCTATTTTTTCTTCTACAAACATCTACAG
Seq A exon
CTACCTGGGATCTGTGAAAGGAACATCAGCAGCAGAATTAGCAAAA
Seq C2 exon
ATAGTAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGCTGTATGGGGAGAGTAGAGCTGAAAATCCAAGGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATGCTGCAGCTGATGTCGTATGCAAGCAGTTGGGATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTTGCAGTCAGGGTCTGATGTTGTATGGCTTGATGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGACTGCAGACATTCCGGAACCGTCAATTTTGACTGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675_MULTIEX2-3/4=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=90.7)
Main Inclusion Isoform:
ENST00000313599fB1451
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTAGTTCAAAGTCAGGAAGA
R:
CTACTCTCCCCATACAGCGGT
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development