HsaEX6064960 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7403535-7432736:-
Coord C1 exon
chr12:7432416-7432736
Coord A exon
chr12:7406532-7406852
Coord C2 exon
chr12:7403535-7403855
Length
321 bp
Sequences
Splice sites
3' ss Seq
TGTTTATATCTCTGTTTCAGATA
3' ss Score
11.47
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAAGCCAATCTGGGTTTGAGGCTAGTGGATGGAAACAACTCCTGTTCAGGGAGAGTGGAGGTGAAATTCCAAGAAAGGTGGGGAACTATATGTGATGATGGGTGGAACTTGAATACTGCTGCCGTGGTGTGCAGGCAACTAGGATGTCCATCTTCTTTTATTTCTTCTGGAGTTGTTAATAGCCCTGCTGTATTGCGCCCCATTTGGCTGGATGACATTTTATGCCAGGGGAATGAGTTGGCACTCTGGAATTGCAGACATCGTGGATGGGGAAATCATGACTGCAGTCACAATGAGGATGTCACATTAACTTGTTATG
Seq A exon
ATAGTAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGCTGTATGGGGAGAGTAGAGCTGAAAATCCAAGGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATGCTGCAGCTGATGTCGTATGCAAGCAGTTGGGATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTTGCAGTCAGGGTCTGATGTTGTATGGCTTGATGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGACTGCAGACATTCCGGAACCGTCAATTTTGACTGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAG
Seq C2 exon
ATGGAGCAGATTTGGAACTGCGACTAGCAGATGGAAGTAACAATTGTTCAGGGAGAGTAGAGGTGAGAATTCATGAACAGTGGTGGACAATATGTGACCAGAACTGGAAGAATGAACAAGCCCTTGTGGTTTGTAAGCAGCTAGGATGTCCGTTCAGCGTCTTTGGCAGTCGTCGTGCTAAACCTAGTAATGAAGCTAGAGACATTTGGATAAACAGCATATCTTGCACTGGGAATGAGTCAGCTCTCTGGGACTGCACATATGATGGAAAAGCAAAGCGAACATGCTTCCGAAGATCAGATGCTGGAGTAATTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675_MULTIEX2-4/4=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=90.7)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
ENST00000313599fB1450
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTCTGGAATTGCAGACA
R:
TATGTGCAGTCCCAGAGAGCT
Band lengths:
342-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains