MmuEX0010136 @ mm9
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124257019-124261725:+
Coord C1 exon
chr6:124257019-124257339
Coord A exon
chr6:124258962-124259285
Coord C2 exon
chr6:124261405-124261725
Length
324 bp
Sequences
Splice sites
3' ss Seq
AATCTTGATCTCTTCTCTAGATG
3' ss Score
8.55
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GAGAAATGAAGAAGGAACTGAGACTGGCGGGTGGTGAAAACAACTGTAGTGGGAGAGTGGAACTTAAGATCCATGACAAGTGGGGCACAGTGTGCAGTAACGGCTGGAGCATGAATGAAGTGTCCGTGGTTTGCCAGCAGCTGGGATGCCCAACTTCTATTAAAGCCCTTGGATGGGCTAACTCCAGCGCCGGCTCTGGATATATCTGGATGGACAAAGTTTCTTGTACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGATGGGTGGGGAAAGCATAACTGTACCCATGAAAAAGATGCTGGAGTGACCTGCTCAG
Seq A exon
ATGGATCTAATTTGGAGATGAGACTGGTGAACAGTGCGGGCCACCGATGCTTAGGAAGAGTAGAAATAAAGTTCCAGGGAAAGTGGGGGACGGTGTGTGACGACAACTTCAGCAAAGATCACGCTTCTGTGATTTGTAAACAGCTTGGATGTGGAAGTGCCATTAGTTTCTCTGGCTCAGCTAAATTGGGAGCTGGTTCTGGACCAATCTGGCTCGATGACCTGGCATGCAATGGAAATGAGTCAGCTCTCTGGGACTGCAAACACCGGGGATGGGGCAAGCATAACTGTGACCATGCTGAGGATGTCGGTGTGATTTGCTTAG
Seq C2 exon
AGGGAGCAGATCTGAGCCTGAGACTAGTGGATGGAGTGTCCAGATGTTCAGGAAGATTGGAAGTGAGATTCCAAGGAGAATGGGGGACCGTGTGTGATGATAACTGGGATCTCCGGGATGCTTCTGTGGTGTGCAAGCAACTGGGATGTCCAACTGCCATCAGTGCCATTGGTCGAGTTAATGCCAGTGAGGGATCTGGACAGATTTGGCTTGACAACATTTCATGCGAAGGACATGAGGCAACTCTTTGGGAGTGTAAACACCAAGAGTGGGGAAAGCATTACTGTCATCATAGAGAAGACGCTGGTGTGACATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=89.0)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGATGGGTGGGGAAAGC
R:
GCTTTCCCCACTCTTGGTGTT
Band lengths:
342-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: