RnoEX6015015 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156754461-156759138:+
Coord C1 exon
chr4:156754461-156754781
Coord A exon
chr4:156756408-156756731
Coord C2 exon
chr4:156758818-156759138
Length
324 bp
Sequences
Splice sites
3' ss Seq
AACCTTGGTCGCTTCTCTAGATG
3' ss Score
7.31
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AAGGAAGGAAGAAGGAACTGAGACTGGCCGGCGGTGAAAACAACTGTAGTGGGAGAGTGGAGCTCAAGATCCACGAGAAGTGGGGCACAGTGTGCGGTAACGGCTGGAGCATGAACGAGGTGTCCGTGGTTTGCCAGCAGCTAGGATGCCCAACTTTGATTAAAGCCCCGGGATGGGCTAACGCCAGCGCGGGCTCTGGGGACATCTGGATGGACAAGGTTTCTTGCACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGAGGGGTGGGGAAAGCACAACTGTACCCATGAACAAGATGCTGGAGTGACCTGCGCAG
Seq A exon
ATGGATCTAATTTGGAGATGAGACTGGTGAACAGCGGGGACAACCGATGCTCAGGAAGAGTAGAAATAAAGTTCCAGGGAAAGTGGGGGACAGTGTGTGACGACAACTTCAGCAAAGATCACGCTTCTGTGATTTGTAAACAACTTGGATGTGGAAGTGCCATCAGTTTCTCTGGCTCAGCTAAATTAGGAGCTGGTTCTGGACAAATCTGGCTTGATGATCTGGCATGCAATGGAAATGAGTCAGCTATCTGGGACTGCAAACACCGGGGATGGGGAAGGCACAACTGTGACCATGCTGAGGACGTCGGTGTGATCTGCTTAG
Seq C2 exon
ACGGAGCGGATCTGAGCCTGAGACTGGTGGATGGGGTGTCCAAATGTTCAGGAAGATTGGAAGTGAGATTCCAAGGAGAGTGGGGGACCGTGTGTGACGACAGCTGGGATCGCCGTGACGCTTCTGTGGTGTGTAAGCAACTGGGATGTCCAACTGCCATCACTGCCATTGGCCGAGTTAATGCCAGTGAGGGATCCGGACCAATTTGGCTTGACAGTATCTCCTGCGAGGGACATGAGCCGGCTCTTTGGGAGTGTAAGCACCAGGAATGGGGGAAGCATTACTGTAACCACAAAGAAGACGCTGGCGTGACATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGCTCTTTGGGACTGC
R:
TCCTGGTGCTTACACTCCCAA
Band lengths:
353-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]