DreEX6001406 @ danRer10
Exon Skipping
Gene
ENSDARG00000092989 | si:ch211-161n3.3
Description
si:ch211-161n3.3 [Source:ZFIN;Acc:ZDB-GENE-041210-102]
Coordinates
chr4:10963948-10965289:-
Coord C1 exon
chr4:10964993-10965289
Coord A exon
chr4:10964276-10964590
Coord C2 exon
chr4:10963948-10964178
Length
315 bp
Sequences
Splice sites
3' ss Seq
GTCTGATGTGTGTGTTTCAGCTC
3' ss Score
9.66
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
AGTATAAAGAGATCAGGTTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTAGCAATGAGCCCAGTCATTCAGAGGGACTGAAGTCTCATAATTGGCTTGATTATTTTAAATGTCGACCACATGACTTTACTTTATGGCAGTGTCCATCTGCACCCTGGAGACTGACTGACAGTAATAATGAGGTGGCTGTGATCACCTGCACAG
Seq A exon
CTCACGTTCCTCTCAGACTGCGTGGAGGGGGCGGCCGGTGCTCTGGAAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAG
Seq C2 exon
ACTTACCAGATATATCAGCGTCCACTACTCCCGCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTCATCCAGAAACTGGTCCAGAAACTCATCCAGTCCCCCCAGTGGTGGTGATTGTACTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092989-'13-14,'13-13,15-14=AN
Average complexity
A_C2
Mappability confidence:
100%=40=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.449
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.0)
A:
PF0053013=SRCR=WD(100=92.5),PF151021=TMEM154=PU(11.2=15.1),PF0110213=Glycophorin_A=PU(9.8=10.4)
C2:
PF151021=TMEM154=FE(53.8=100),PF0110213=Glycophorin_A=FE(68.8=100),PF153451=TMEM51=PU(42.0=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCAGTCATTCAGAGGGA
R:
ATAAGCAGCGGCACTAAGAGC
Band lengths:
347-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]