MmuEX1002324 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131235044-131236832:+
Coord C1 exon
chr7:131235044-131235097
Coord A exon
chr7:131235644-131235961
Coord C2 exon
chr7:131236803-131236832
Length
318 bp
Sequences
Splice sites
3' ss Seq
CACCAAGTCTCTGTCTGCAGGGG
3' ss Score
6.39
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCTGACTCAG
Seq A exon
GGGACTGGCCAGAGCTGCGACTGGTGGGTGGCTCCAATCGATGCTCAGGGCGTGTGGAGATCCTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAAGTCATATGCAGACAGCTGGGGTGTGGTCAGGCTGTGTCTGCCCTTGGCAAGGCCTACTTTGGCCCTGGTTCGGGAGATATCTTTCTAGATAACCTCCAGTGTGCTGGGGTGGAGCACTTCCTGGGCCAGTGTGCCCATTCTGGCTGGTCAGACCACAACTGTGGCCACCATGAAGATGCTGGTGTCATCTGCTCAG
Seq C2 exon
ATGCTGAAAAACCTCTGTCTGATGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'21-26,'21-25,22-26
Average complexity
C2
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=91.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types