MmuEX0001977 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131234750-131235961:+
Coord C1 exon
chr7:131234750-131234791
Coord A exon
chr7:131235044-131235097
Coord C2 exon
chr7:131235644-131235961
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTGTACCTTTCAGAAT
3' ss Score
10.02
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCATCCCCACAGCAACTTCCAAGATGGTAACAGAAAGACCAC
Seq A exon
AATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCTGACTCAG
Seq C2 exon
GGGACTGGCCAGAGCTGCGACTGGTGGGTGGCTCCAATCGATGCTCAGGGCGTGTGGAGATCCTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAAGTCATATGCAGACAGCTGGGGTGTGGTCAGGCTGTGTCTGCCCTTGGCAAGGCCTACTTTGGCCCTGGTTCGGGAGATATCTTTCTAGATAACCTCCAGTGTGCTGGGGTGGAGCACTTCCTGGGCCAGTGTGCCCATTCTGGCTGGTCAGACCACAACTGTGGCCACCATGAAGATGCTGGTGTCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'19-25,'19-24,21-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.585 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCACAGCAACTTCCAA
R:
CCCACAGGTCATCACACACAG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types