MmuINT0005283 @ mm10
Intron Retention
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131234750-131235097:+
Coord C1 exon
chr7:131234750-131234791
Coord A exon
chr7:131234792-131235043
Coord C2 exon
chr7:131235044-131235097
Length
252 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTTGCTTTTGTACCTTTCAGAAT
3' ss Score
10.02
Exon sequences
Seq C1 exon
CCATCCCCACAGCAACTTCCAAGATGGTAACAGAAAGACCAC
Seq A exon
GTAAGTCCCAGGAGGCACCTATTTGAGTACCAAGTGTTTCTTTCTCTCAGCGCCCATGTCTGTATATGTTGTACCTGCTTTGTGGTGTGAAATGCTAGAACTACATACAGTCCATTTGCTTGCAAATGAATCAACTAACTCTACACTAGAACACAGGACCACTGCAAACCCCAACAGTCACAACCTGAATAAACAGATTGTTTTGTTGTTATAGCTATTATTATTGTTTGGTTTTGCTTTTGTACCTTTCAG
Seq C2 exon
AATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204:ENSMUST00000050586:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=NA C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types