MmuINT0005283 @ mm9
Intron Retention
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:138378264-138378611:+
Coord C1 exon
chr7:138378264-138378305
Coord A exon
chr7:138378306-138378557
Coord C2 exon
chr7:138378558-138378611
Length
252 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTTGCTTTTGTACCTTTCAGAAT
3' ss Score
10.02
Exon sequences
Seq C1 exon
CCATCCCCACAGCAACTTCCAAGATGGTAACAGAAAGACCAC
Seq A exon
GTAAGTCCCAGGAGGCACCTATTTGAGTACCAAGTGTTTCTTTCTCTCAGCGCCCATGTCTGTATATGTTGTACCTGCTTTGTGGTGTGAAATGCTAGAACTACATACAGTCCATTTGCTTGCAAATGAATCAACTAACTCTACACTAGAACACAGGACCACTGCAAACCCCAACAGTCACAACCTGAATAAACAGATTGTTTTGTTGTTATAGCTATTATTATTGTTTGGTTTTGCTTTTGTACCTTTCAG
Seq C2 exon
AATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-5430419D17Rik:NM_175166:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: