RnoEX0049118 @ rn6
Exon Skipping
Gene
ENSRNOG00000022737 | LOC691970
Description
similar to deleted in malignant brain tumors 1 isoform c precursor [Source:RGD Symbol;Acc:1593322]
Coordinates
chr1:201802021-201803866:+
Coord C1 exon
chr1:201802021-201802074
Coord A exon
chr1:201802630-201802947
Coord C2 exon
chr1:201803766-201803866
Length
318 bp
Sequences
Splice sites
3' ss Seq
CACTAGGTCTCTGTCTGCAGGGG
3' ss Score
6.64
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AGCCTACACATACTCCTAGTGGGAATGTCTCACCTCTTCCCGTGCCTGACTCAG
Seq A exon
GGGACTGGCCAGAGCTGCGGCTAGTGGGTGGCTCCAATCGCTGCTCAGGGCGTGTGGAGATCCTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAGGTCGTATGCAGACAGCTGGGGTGTGGTCAGGCTGTGTCTGCCCTTGGCAAGGCCTACTTTGGCCCTGGCTCGGGAGATATCTTCCTAGATAACCTCCAATGTGCTGGGGTGGAGCACTTCCTGGGTCAGTGTGCCCATTCTGGCTGGTCAGATCACAACTGTGGCCACCATGAAGATGCTGGTGTCATCTGCTCAG
Seq C2 exon
ATGCTGAAAAACCTCTGTCCCATGTTCCAGGTCAGTGGTGTCTTTTATAGGTGGGACTTAAATATCGGCTGCCTTTGGCTTTATCTTTGGGCTGTTTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022737-'14-16,'14-15,15-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=0.000 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=91.6)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000039130fB7739
Main Skipping Isoform:
ENSRNOT00000039130fB7740
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]