MmuEX1002325 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131235644-131238283:+
Coord C1 exon
chr7:131235644-131235961
Coord A exon
chr7:131236803-131236832
Coord C2 exon
chr7:131237966-131238283
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTTACTTACAGATG
3' ss Score
11.31
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGACTGGCCAGAGCTGCGACTGGTGGGTGGCTCCAATCGATGCTCAGGGCGTGTGGAGATCCTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAAGTCATATGCAGACAGCTGGGGTGTGGTCAGGCTGTGTCTGCCCTTGGCAAGGCCTACTTTGGCCCTGGTTCGGGAGATATCTTTCTAGATAACCTCCAGTGTGCTGGGGTGGAGCACTTCCTGGGCCAGTGTGCCCATTCTGGCTGGTCAGACCACAACTGTGGCCACCATGAAGATGCTGGTGTCATCTGCTCAG
Seq A exon
ATGCTGAAAAACCTCTGTCTGATGTTCCAG
Seq C2 exon
GAGACTGGCCAGAGCTTCGCCTAGTGGGTGGTTCCAGTCGGTGCTCAGGACGAGTGGAAATCCTCTACCAGGGAGTCTGGGGCACCATATGTGATGACCTGTGGGGTTCAAATGAAGCTGAGGTTGTATGCCGCCAGCTAGAGTGTGGCCAGGCTGTTTCTAGCCTTGGTGAGGCTTACTTTGGCCCAGGCTCTGGAGAAATCTTCCTAGACAACCTTCAGTGTTCTGGAATGGAACATTACCTCGGCCAGTGTCCACATTCTGGATGGTCTGAACATAACTGTGGCCACCATGAGGATGCTGGTGTTATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATGAAGATGCTGGTGT
R:
TCACATATGGTGCCCCAGACT
Band lengths:
126-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types