HsaEX0013763 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7357380-7368965:-
Coord C1 exon
chr12:7368933-7368965
Coord A exon
chr12:7367236-7367331
Coord C2 exon
chr12:7357380-7357486
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGAAGCATCCATTCTCAGTTT
3' ss Score
2.11
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GACAGTCGCTGAAATCACTGAATGCCTCCTCAG
Seq A exon
TTTCAACCAGAAGGAGGGGTTCTCTCGAGGAGAATTTATTCCATGAGATGGAGACCTGCCTCAAGAGAGAGGACCCACATGGGACAAGAACCTCAG
Seq C2 exon
ATGACACCCCCAACCATGGTTGTGAAGATGCTAGCGACACATCGCTGTTGGGAGTTCTTCCTGCCTCTGAAGCCACAAAATGACTTTAGACTTCCAGGGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.343 C2=0.317
Domain overlap (PFAM):
C1:
PF151641=WBS28=PU(10.0=53.8)
A:
PF151641=WBS28=PD(35.7=75.8)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGAAATCACTGAATGCCT
R:
CTGGTGAGCCCTGGAAGTCTA
Band lengths:
135-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development