HsaEX0013762 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7357380-7368965:-
Coord C1 exon
chr12:7368933-7368965
Coord A exon
chr12:7368087-7368197
Coord C2 exon
chr12:7357380-7357486
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGCTTAATTTCTATACAGGTC
3' ss Score
8.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GACAGTCGCTGAAATCACTGAATGCCTCCTCAG
Seq A exon
GTCATTTAGCACTTATTTTATCCAGTATCTTTGGGCTCCTTCTCCTGGTTCTGTTTATTCTATTTCTCACGTGGTGCCGAGTTCAGAAACAAAAACATCTGCCCCTCAGAG
Seq C2 exon
ATGACACCCCCAACCATGGTTGTGAAGATGCTAGCGACACATCGCTGTTGGGAGTTCTTCCTGCCTCTGAAGCCACAAAATGACTTTAGACTTCCAGGGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.317
Domain overlap (PFAM):
C1:
PF151641=WBS28=PU(10.0=53.8)
A:
PF151641=WBS28=FE(52.9=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGCTGAAATCACTGAATGC
R:
CTGGTGAGCCCTGGAAGTCTA
Band lengths:
138-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development