HsaEX0013762 @ hg19
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7509976-7521561:-
Coord C1 exon
chr12:7521529-7521561
Coord A exon
chr12:7520683-7520793
Coord C2 exon
chr12:7509976-7510082
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGCTTAATTTCTATACAGGTC
3' ss Score
8.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GACAGTCGCTGAAATCACTGAATGCCTCCTCAG
Seq A exon
GTCATTTAGCACTTATTTTATCCAGTATCTTTGGGCTCCTTCTCCTGGTTCTGTTTATTCTATTTCTCACGTGGTGCCGAGTTCAGAAACAAAAACATCTGCCCCTCAGAG
Seq C2 exon
ATGACACCCCCAACCATGGTTGTGAAGATGCTAGCGACACATCGCTGTTGGGAGTTCTTCCTGCCTCTGAAGCCACAAAATGACTTTAGACTTCCAGGGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675_MULTIEX1-2/3=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.247
Domain overlap (PFAM):
C1:
PF151791=Myc_target_1=PU(23.4=84.6),PF0042914=TLV_coat=PU(25.0=92.3),PF151641=WBS28=PU(15.4=61.5)
A:
PF151641=WBS28=FE(52.9=100),PF153301=SIT=PU(61.5=84.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGCTGAAATCACTGAATGC
R:
CTGGTGAGCCCTGGAAGTCTA
Band lengths:
138-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)