RnoEX6015007 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156779341-156781024:+
Coord C1 exon
chr4:156779341-156779370
Coord A exon
chr4:156779747-156779854
Coord C2 exon
chr4:156780935-156781024
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTATTTACCCTTGCTTAGGTC
3' ss Score
7.84
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAATGACTTTAGAATCACAGCATGGCACAG
Seq A exon
GTCATTCAACCCTCACTGCACTCCTGGTTTGTGGAGCCATTCTATTGGTCCTTCTCATTGCCTTCCTCTTGTGGACTCTGAAGCGACGACAGACCCAACGGCTTACAG
Seq C2 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTAGAATCACAGCATGGCA
R:
CCGAGGATTTCAGCAAGTCCA
Band lengths:
117-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]