BtaEX0007872 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102276190-102278444:+
Coord C1 exon
chr5:102276190-102276225
Coord A exon
chr5:102276430-102276537
Coord C2 exon
chr5:102278269-102278444
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTCCCTGTGCTCAGGTC
3' ss Score
8.97
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
AAATTGCAGAGAGCAAAGGATCAGTAAAGGCCGCAG
Seq A exon
GTCACTCATCCACTGTTGCACTTGGAATCCTTGGGGTCATTCTGTTGGCCTTTCTCATCGCAACCCTCTTGTGGATTCAGAGGCGAAGACAGAGACAGCGGCTTGCAG
Seq C2 exon
TTTCCTCAAGAGGAGAGAACTCTGTCCACGAAATTCAATACCGGGAGATGAATTCTTGCCTAAAAGCAGATGATCTGGACCTATATAATTCCTCAGGTCTGTGGGTTCTTAGAGGGTCCATAGCCCTGGGGTTCAGACTGGTAACTGCAGCTGAGGCTGAGAGGCATTCTACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669_MULTIEX1-10/12=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAAAGGATCAGTAAAGGCC
R:
TCAAGTAGAATGCCTCTCAGCCT
Band lengths:
203-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development