HsaEX0013758 @ hg38
Exon Skipping
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7481161-7483004:-
Coord C1 exon
chr12:7482966-7483004
Coord A exon
chr12:7482643-7482762
Coord C2 exon
chr12:7481161-7481256
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGATATTTACTTTTACTTAGGTC
3' ss Score
7.56
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
ATATTTCAGTGCAGAAAACCCCACAAAAAGCCACAACAG
Seq A exon
GTCGCTCATCCCGTCAGTCATCCTTTATTGCAGTCGGGATCCTTGGGGTTGTTCTGTTGGCCATTTTCGTCGCATTATTCTTCTTGACTAAAAAGCGAAGACAGAGACAGCGGCTTGCAG
Seq C2 exon
TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=0.056 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGCAGAAAACCCCACAA
R:
CTGAGGAATTCATTAGGTCCAGA
Band lengths:
130-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development