DreEX6001396 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10951656-10952436:-
Coord C1 exon
chr4:10952107-10952436
Coord A exon
chr4:10951822-10952031
Coord C2 exon
chr4:10951656-10951742
Length
210 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTGTTTGTTTTAGATT
3' ss Score
12.34
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGTGTGTGTTTTAGCTCACGTTCCTCTCAGACTGCGTGGAGGGCACAACCAGTGCTCTGGGAGGCTGGAAGTATATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACTTCAGTGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCTCACAAAGAGCACGCTGGACTCACCTGTGCAG
Seq A exon
ATTTGTCAGTGTCCACTACTCCTGCCACATCAGCATCACCTTCTGGTCCAATGTCTCAGACAGTGAGCTCAACATCAGTCTCTTGTTCACAAACACGTCCAGAAACACTCGCAGTTCCCCCAGTGCTTGTGATTGTACTGGGAGTTGTGCTCGTACTGCTCTTAGTAGCATTGCTTATACTGATTCAGCAGAACAGACTCATGAGGAAAG
Seq C2 exon
CTCTTGCTGACTGGTACACTGGACTACACAGGGCTCCAACGGAGGCAGTTTATGAGGAAATCTACCAAAGACACAATGACTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3),PF151021=TMEM154=PU(17.2=14.4)
A:
PF151021=TMEM154=FE(75.3=100)
C2:
PF151021=TMEM154=PD(6.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGAGGCTGGAAGTAT
R:
AGTCCAGTGTACCAGTCAGCA
Band lengths:
301-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]