HsaEX0013873 @ hg19

Exon Skipping

Gene

ENSG00000117335 | CD46

Description

CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]

Coordinates

chr1:207941124-207956675:+

Coord C1 exon

chr1:207941124-207941168

Coord A exon

chr1:207943666-207943707

Coord C2 exon

chr1:207956637-207956675

Length

42 bp

Sequences

Splice sites

3' ss Seq

AATCAAACTTATTTTTCTAGGTC

3' ss Score

7.93

5' ss Seq

CAGGTTGGT

5' ss Score

8.08

Exon sequences

Seq C1 exon

TGTCGACTTCTTCCACTACAAAATCTCCAGCGTCCAGTGCCTCAG

Seq A exon

GTCCTAGGCCTACTTACAAGCCTCCAGTCTCAAATTATCCAG

Seq C2 exon

GATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000117335_MULTIEX1-3/3=2-C2

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.741 A=0.586 C2=0.007

Domain overlap (PFAM):

C1:

PF0248011=Herpes_gE=FE(16.3=100),PF151021=TMEM154=FE(14.4=100),PF0200911=Rifin_STEVOR=PU(21.5=87.5)

A:

PF146101=DUF4448=FE(9.3=100)

C2:

PF0248011=Herpes_gE=FE(16.4=100),PF060117=TRP=PU(7.0=30.8),PF122163=m04gp34like=FE(20.7=100),PF128772=DUF3827=PU(15.6=76.9),PF054546=DAG1=PU(15.9=76.9),PF151761=LRR19-TM=PU(3.4=15.4),PF151021=TMEM154=PU(14.3=69.2),PF0200911=Rifin_STEVOR=PU(9.1=30.8),PF0265610=DUF202=PU(21.4=69.2),PF055686=ASFV_J13L=PU(7.0=30.8)

Main Inclusion Isoform:

ENSP00000313875