HsaEX0014008 @ hg38
Exon Skipping
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3800462-3801093:+
Coord C1 exon
chr20:3800462-3800498
Coord A exon
chr20:3800743-3800865
Coord C2 exon
chr20:3800971-3801093
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGCCCTGCCTGGCTCTCTAGGTG
3' ss Score
10.58
5' ss Seq
AATGTGCGC
5' ss Score
2.86
Exon sequences
Seq C1 exon
CGAGCAGTTTGCCATCAGACGCTTCCAGTCTATGCCG
Seq A exon
GTGAGGCTGCTGGGCCACAGCCCCGTGCTTCGGAACATCACCAACTCCCAGGCGCCCGACGGCCGGAGGAAGAGCGAGGCGGGCAGTGGAGCTGCCAGCAGCTCTGGGGAAGACAAGGAGAAT
Seq C2 exon
GATGGATTTGTCTTCAAGATGCCATGGAAGCCCACACATCCCAGCTCCACCCATGCTCTGGCAGAGTGGGCCAGCCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCGACCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224_MULTIEX1-4/16=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.849 C2=0.736
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(28.6=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
A:
PF066178=M-inducer_phosp=FE(14.7=100)
C2:
PF066178=M-inducer_phosp=PD(0.1=0.0),PF066178=M-inducer_phosp=FE(20.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGTTTGCCATCAGACG
R:
CCGAGCTGGGTCTCTGGG
Band lengths:
146-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development