HsaEX0014879 @ hg38
Exon Skipping
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128419114-128422978:+
Coord C1 exon
chr9:128419114-128419278
Coord A exon
chr9:128421204-128421511
Coord C2 exon
chr9:128422868-128422978
Length
308 bp
Sequences
Splice sites
3' ss Seq
ACAGGCCCCTCCCCTCACAGACG
3' ss Score
9.01
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
AAGGGAGAAGAAATCTGGCATCTCTCCAGAATGCTTCTCATTGCAGGGCCGCTGGCCTAGAAATGGCCTCAAATGGAAGCTGCCACCCGATCCTGGTGGAGGCTTTGAGCTAGGCTAGAGATCAGGACTCCAGGGTTCAGTGCGCACGTGCTGCCCCTGCACTAG
Seq A exon
ACGGCCCTGCCAGCCCGAGCCGCCAGAGAGGACCCCGAGCCCCCTGCTGGGAGACGACAGACCTCTGAGGCCACAGGCCGACGCGGGACACCCACCCCTCCTTCTGGTCCCCTACTCCTTCCTCTTGGGGCCTTCCCTGGGTGTAGGTTGGGCCCAGCCAGCCCTTTTCACCCCAGCCTTCAGGGCCCAGCTCAACCCCAGTGGGACCTGTGGTTGGCTGGATTTGAAGAGGAGCAGACAGGAACCTCTGAAGTCCACTGGGGCCCAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCACAG
Seq C2 exon
GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123_MULTIEX1-3/3=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PU(30.4=96.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGAAGAAATCTGGCATCT
R:
CTCAGGCCTCCAGACCACAG
Band lengths:
264-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development