HsaEX0014879 @ hg19
Exon Skipping
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]
Coordinates
chr9:131182759-131185257:+
Coord C1 exon
chr9:131182759-131183353
Coord A exon
chr9:131183483-131183790
Coord C2 exon
chr9:131185147-131185257
Length
308 bp
Sequences
Splice sites
3' ss Seq
ACAGGCCCCTCCCCTCACAGACG
3' ss Score
9.01
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
CACCCCTCCCCTGTCCGGTCCTCCGGCCCCTCCGCCGTCGCCCCTCCGGGGTCCAGCCGGGCGGGGCTGCTCCAGGGTCGCGGCTGGCGCGGGTCCCCGGGCCCTGGCCCTCCGGTGCCCCGGGCCAAGGAGAGAAAACTTGAGCATCCACGCACAGGGGTGGGGAGCAGGATCCCACTCTGAGGGTGCACTGCCCCGCCCTCTCCGGGTCTGCCTCGGCCCCGCCCGGGCCCCAGGCCCCGCCCCCTCCCCTCGGCCGGCCCGAGAGCTCCGGGGGCCGCTGCAGCCGCCCAAGCGCCCGCCATGCGCGCTGCCCGCGCCGCGCCGCTGCTCCAGCTGCTGCTCCTGCTGGGGCCGTGGCTGGAGGCTGCGGGCGTTGCGGAGTCGCCGCTGCCCGCCGTGGTCCTTGCCATCCTGGCCCGCAATGCCGAACACTCGCTGCCCCACTACCTGGGCGCTCTGGAGCGGCTGGACTACCCCCGGGCCAGGATGGCCCTCTG
Seq A exon
ACGGCCCTGCCAGCCCGAGCCGCCAGAGAGGACCCCGAGCCCCCTGCTGGGAGACGACAGACCTCTGAGGCCACAGGCCGACGCGGGACACCCACCCCTCCTTCTGGTCCCCTACTCCTTCCTCTTGGGGCCTTCCCTGGGTGTAGGTTGGGCCCAGCCAGCCCTTTTCACCCCAGCCTTCAGGGCCCAGCTCAACCCCAGTGGGACCTGTGGTTGGCTGGATTTGAAGAGGAGCAGACAGGAACCTCTGAAGTCCACTGGGGCCCAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCACAG
Seq C2 exon
GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PU(21.5=39.4)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PU(30.4=96.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATCCCACTCTGAGGGTG
R:
ACATTGTGGTCCGTGGCAC
Band lengths:
354-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)