HsaINT0033953 @ hg19
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]
Coordinates
chr9:131182759-131185257:+
Coord C1 exon
chr9:131182759-131183353
Coord A exon
chr9:131183354-131185146
Coord C2 exon
chr9:131185147-131185257
Length
1793 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTTTTTCTTCCCGTCCCCAGGTG
3' ss Score
13.57
Exon sequences
Seq C1 exon
CCGGGGAATCCGGATTCCGGGGGTTCAACGCCCAGGGGTTCCATGAGCCCCTACTGTTCTCGGACGCCCGGCCGGCCCCGACGCACTCGTCCTAGCACCCCTCCCCTGTCCGGTCCTCCGGCCCCTCCGCCGTCGCCCCTCCGGGGTCCAGCCGGGCGGGGCTGCTCCAGGGTCGCGGCTGGCGCGGGTCCCCGGGCCCTGGCCCTCCGGTGCCCCGGGCCAAGGAGAGAAAACTTGAGCATCCACGCACAGGGGTGGGGAGCAGGATCCCACTCTGAGGGTGCACTGCCCCGCCCTCTCCGGGTCTGCCTCGGCCCCGCCCGGGCCCCAGGCCCCGCCCCCTCCCCTCGGCCGGCCCGAGAGCTCCGGGGGCCGCTGCAGCCGCCCAAGCGCCCGCCATGCGCGCTGCCCGCGCCGCGCCGCTGCTCCAGCTGCTGCTCCTGCTGGGGCCGTGGCTGGAGGCTGCGGGCGTTGCGGAGTCGCCGCTGCCCGCCGTGGTCCTTGCCATCCTGGCCCGCAATGCCGAACACTCGCTGCCCCACTACCTGGGCGCTCTGGAGCGGCTGGACTACCCCCGGGCCAGGATGGCCCTCTG
Seq A exon
GTGAGAGACCCGGGCATTGGCACCGAGTGGGCACCTAACCCCCAGCTTCGCAGATGGCCCCCGCCCCCGGCGGCCCTGTCTGCTCGCTCCCTGCCCAGACACCACCTAGACAGGCCCCTCCCCTCACAGACGGCCCTGCCAGCCCGAGCCGCCAGAGAGGACCCCGAGCCCCCTGCTGGGAGACGACAGACCTCTGAGGCCACAGGCCGACGCGGGACACCCACCCCTCCTTCTGGTCCCCTACTCCTTCCTCTTGGGGCCTTCCCTGGGTGTAGGTTGGGCCCAGCCAGCCCTTTTCACCCCAGCCTTCAGGGCCCAGCTCAACCCCAGTGGGACCTGTGGTTGGCTGGATTTGAAGAGGAGCAGACAGGAACCTCTGAAGTCCACTGGGGCCCAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCACAGGTTGGGGGTGCCATCAGCACTGGGCTCCGGGCTGTGCAGGGGAGTCAGACCGGCCCCCCCACCGCCCCCGTGCTGGGGCCAGCTCTCTTGGTAGATCTTGGTAGAGGGGCGGGATCCTGTCAGCCAAGGGCAGTCCCCCTTCCTGGAGCCTCTCCCCTCTGGCATCTCTGTACCCCCAGGGCACTGGGATCGAAGGCCACAACCCCTGGTCTGTAGACACCAGAACAGGGAGGAGTCCCTGGCTGAGGTTGGGGGTAAACTGAGAAAAATGACAAGCCACCCTCTTCAACACACCACAGTTGGGCTGGGGGGGTGGAGCCCTGGCCTGGGGAGGCCGCCCACAATTACCACAGTTTGGGAGTTTGTTAGTTCCCACCCCTGTAAGACTTGACACGTAGTCTTCATTTCTGGGGAATTGGCTTAAAGGGGCAGCATCACCCAAAACCTGGGCACTTGGCTAAACCCCCACCTCTGTTATGGGGGCCCCTTCCCCAGGAGAGGGGAGGCTGTGCCCCATGACAGCAGAGCTTGGACCCATCTGCATTCTTAGGGACGCTTAGAGCATGGTTTGGTCCTTATTACAACCTGGGGGTGGAGGAAAGCAGCAGCTCTTCTGTCTAGTCCCCATTCAGAGAGGGACAGGGGCTGGCCTGTGGTCACACAGCCACAGGTCACATAGGTAGGTATCTGCCCACCTAACGAAGGTAACCAGGGAATGCACCAGGTGTGATCCTTAAAGTCGAGGTACTTTTCATCTTTCAAAATGCATTCGTTGGCCAGGTGTGGTGGCTCACGCCTGTAATTTCAGCACTTTGGGAGGCCGAAGTGGGCAGATCACCTGAGGTGAGGAGTTCAAGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTAAACAAACAAAAATTAGCCGGGCATGGTGGTGCACACCTGTAATCCCAGGTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGTCGAGATCATACCACTGCACTACAGCCTGGGCGACAGAGCAAGATTCCATCTCAAAAAAAATGCATTATTCTTCTCTTATCTTTGTCCATGACATAAGCAGGACAGCTTAAGTTATAGAGGGAGGACGTGAAGCCCAGAGAAAGATGGGACTTGCCTGAGGTCACACAGCAGGTCACAGAACTGTGGTGGGGACCTGGCTGTGCTGCCTCCAGCCTCTCTGCTGTAGCACACCTACCCTTCACTGTTCCAAGGAGAGCTCGACCTCAAAGGTGTTAGTGCTTTGGGGTCAAGGCTGCCTTGGGGTTCAATCCTGTGGCTGTGCCCCCTCAGCCTTTTTTCTTCCCGTCCCCAG
Seq C2 exon
GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123-CERCAM:NM_016174:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PU(21.5=39.4)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PU(30.4=96.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATCCCACTCTGAGGGTG
R:
ACATTGTGGTCCGTGGCAC
Band lengths:
354-2147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)