HsaINT0033953 @ hg38
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128419607-128422978:+
Coord C1 exon
chr9:128419607-128419802
Coord A exon
chr9:128419803-128422867
Coord C2 exon
chr9:128422868-128422978
Length
3065 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
3' ss Seq
TTTTTTCTTCCCGTCCCCAGGTG
3' ss Score
13.57
Exon sequences
Seq C1 exon
GGAAAGGGACCTGTCTGAGGTTGGTGACAGACACCCAGTTCGATCCCATCTGTGGTGCCGCCAGGCCGCTCCCTTTTCTGCTCCTCTCCCGAGAGGCTGCAGAGTTCTTTCCCTCCCAGCAGGGTCCTAAGGACCCCGGCGGTGCTCCAGGGGAGCCAACATCCCCTGCTTTGGAGGACGGACGGGTCGGGTCGCA
Seq A exon
GTGAGCAGCTCCGTGGTGTCCCCTAGTTCTACACTCAGACCAAGAGAGGGCTGTGAGGGCTGTGCTCTTTTTTTTTTTTTCTTTTTGAGACGGAGTCTCGGTCTGTCATCCAGGCTGTAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAGTACAGGCACCCGCCACGACGCCCGGCTAATTTTTGTATTTTTAGTACAGATGGGATTTCACCATCTTGGCCAGGCTGGTCTTGAACTGATCTCAGGTGATCCTCCCGCCTCGGTCTCCCAAAGTGCCGGGATTACAGGCGTGAGCTACCACGCCCGGCCTGGCTGTGCTCTCTTAAAGGGCCGAAGCAATGCGGGTGCTGGCGACCGACGCAAGGAGGTGACGCACAGGGGACTTAAGGAGCGGACCGCCGCGGGAGGACGCGCCCAGCTCAGGGGGACTCCCTCTGCGCCCCCCACGCTGGGTCTCCGGCCCACGCGTGGCCCGGCTGGTCTGCGGAGCTAGCGCCAGGGCCGCCAGAGGGCGCCCGGGGCGGAGGATGGGGCGGGAGCCGGGGAAGCCCGGGAGGTGGTGGCCGAGTGGGCGCCGCCCCTCTGGGTCTGCGGCTCAGGTCGAAGAGTCGGCTGCGTGGGCCGGGGAATCCGGATTCCGGGGGTTCAACGCCCAGGGGTTCCATGAGCCCCTACTGTTCTCGGACGCCCGGCCGGCCCCGACGCACTCGTCCTAGCACCCCTCCCCTGTCCGGTCCTCCGGCCCCTCCGCCGTCGCCCCTCCGGGGTCCAGCCGGGCGGGGCTGCTCCAGGGTCGCGGCTGGCGCGGGTCCCCGGGCCCTGGCCCTCCGGTGCCCCGGGCCAAGGAGAGAAAACTTGAGCATCCACGCACAGGGGTGGGGAGCAGGATCCCACTCTGAGGGTGCACTGCCCCGCCCTCTCCGGGTCTGCCTCGGCCCCGCCCGGGCCCCAGGCCCCGCCCCCTCCCCTCGGCCGGCCCGAGAGCTCCGGGGGCCGCTGCAGCCGCCCAAGCGCCCGCCATGCGCGCTGCCCGCGCCGCGCCGCTGCTCCAGCTGCTGCTCCTGCTGGGGCCGTGGCTGGAGGCTGCGGGCGTTGCGGAGTCGCCGCTGCCCGCCGTGGTCCTTGCCATCCTGGCCCGCAATGCCGAACACTCGCTGCCCCACTACCTGGGCGCTCTGGAGCGGCTGGACTACCCCCGGGCCAGGATGGCCCTCTGGTGAGAGACCCGGGCATTGGCACCGAGTGGGCACCTAACCCCCAGCTTCGCAGATGGCCCCCGCCCCCGGCGGCCCTGTCTGCTCGCTCCCTGCCCAGACACCACCTAGACAGGCCCCTCCCCTCACAGACGGCCCTGCCAGCCCGAGCCGCCAGAGAGGACCCCGAGCCCCCTGCTGGGAGACGACAGACCTCTGAGGCCACAGGCCGACGCGGGACACCCACCCCTCCTTCTGGTCCCCTACTCCTTCCTCTTGGGGCCTTCCCTGGGTGTAGGTTGGGCCCAGCCAGCCCTTTTCACCCCAGCCTTCAGGGCCCAGCTCAACCCCAGTGGGACCTGTGGTTGGCTGGATTTGAAGAGGAGCAGACAGGAACCTCTGAAGTCCACTGGGGCCCAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCACAGGTTGGGGGTGCCATCAGCACTGGGCTCCGGGCTGTGCAGGGGAGTCAGACCGGCCCCCCCACCGCCCCCGTGCTGGGGCCAGCTCTCTTGGTAGATCTTGGTAGAGGGGCGGGATCCTGTCAGCCAAGGGCAGTCCCCCTTCCTGGAGCCTCTCCCCTCTGGCATCTCTGTACCCCCAGGGCACTGGGATCGAAGGCCACAACCCCTGGTCTGTAGACACCAGAACAGGGAGGAGTCCCTGGCTGAGGTTGGGGGTAAACTGAGAAAAATGACAAGCCACCCTCTTCAACACACCACAGTTGGGCTGGGGGGGTGGAGCCCTGGCCTGGGGAGGCCGCCCACAATTACCACAGTTTGGGAGTTTGTTAGTTCCCACCCCTGTAAGACTTGACACGTAGTCTTCATTTCTGGGGAATTGGCTTAAAGGGGCAGCATCACCCAAAACCTGGGCACTTGGCTAAACCCCCACCTCTGTTATGGGGGCCCCTTCCCCAGGAGAGGGGAGGCTGTGCCCCATGACAGCAGAGCTTGGACCCATCTGCATTCTTAGGGACGCTTAGAGCATGGTTTGGTCCTTATTACAACCTGGGGGTGGAGGAAAGCAGCAGCTCTTCTGTCTAGTCCCCATTCAGAGAGGGACAGGGGCTGGCCTGTGGTCACACAGCCACAGGTCACATAGGTAGGTATCTGCCCACCTAACGAAGGTAACCAGGGAATGCACCAGGTGTGATCCTTAAAGTCGAGGTACTTTTCATCTTTCAAAATGCATTCGTTGGCCAGGTGTGGTGGCTCACGCCTGTAATTTCAGCACTTTGGGAGGCCGAAGTGGGCAGATCACCTGAGGTGAGGAGTTCAAGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTAAACAAACAAAAATTAGCCGGGCATGGTGGTGCACACCTGTAATCCCAGGTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGTCGAGATCATACCACTGCACTACAGCCTGGGCGACAGAGCAAGATTCCATCTCAAAAAAAATGCATTATTCTTCTCTTATCTTTGTCCATGACATAAGCAGGACAGCTTAAGTTATAGAGGGAGGACGTGAAGCCCAGAGAAAGATGGGACTTGCCTGAGGTCACACAGCAGGTCACAGAACTGTGGTGGGGACCTGGCTGTGCTGCCTCCAGCCTCTCTGCTGTAGCACACCTACCCTTCACTGTTCCAAGGAGAGCTCGACCTCAAAGGTGTTAGTGCTTTGGGGTCAAGGCTGCCTTGGGGTTCAATCCTGTGGCTGTGCCCCCTCAGCCTTTTTTCTTCCCGTCCCCAG
Seq C2 exon
GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123:ENST00000420512:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PU(30.4=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development