HsaEX0015343 @ hg38
Exon Skipping
Gene
ENSG00000183196 | CHST6
Description
carbohydrate sulfotransferase 6 [Source:HGNC Symbol;Acc:HGNC:6938]
Coordinates
chr16:75481817-75495384:-
Coord C1 exon
chr16:75495260-75495384
Coord A exon
chr16:75490614-75490769
Coord C2 exon
chr16:75481817-75481891
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATGTGGGCTTGTATGTTCAGTTC
3' ss Score
5.07
5' ss Seq
CTTGTAATT
5' ss Score
-1.61
Exon sequences
Seq C1 exon
CACCGGGCAGCGCCGAGGGTTGCCGGCCGGCGCGCGGGGAGTAGAGGGCGCGGGCCGCAGTGCCGGGTTCCAGAGGGAGCTCTGCGCCGGGTCCTTCCCTGTGGTAGCCCCAGGACACCCCCAGC
Seq A exon
TTCTCTAGGGTGTGTACCCAGGAGTGGATCTGCTGTATCATATGGTCACTCTATTCAACCTTTCGAGAAACCACCAAATTGTTTCTTCAGGAAATGCACCATCTGACATCCCCATTTTATGAGGATCCCCACGTCTCTGTCATCTCACCAACACTT
Seq C2 exon
GTGCTGAGGAACCTCTAATCATCTCCCATGGATTTGTGATCAGCGTTGCAGCTCTCCCAGCAGCCCTGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183196_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCGGGTTCCAGAGG
R:
CACTGTCCAGGGCTGCTG
Band lengths:
142-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development