HsaEX0015344 @ hg38
Exon Skipping
Gene
ENSG00000183196 | CHST6
Description
carbohydrate sulfotransferase 6 [Source:HGNC Symbol;Acc:HGNC:6938]
Coordinates
chr16:75471951-75495384:-
Coord C1 exon
chr16:75495260-75495384
Coord A exon
chr16:75481817-75481891
Coord C2 exon
chr16:75471951-75473467
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCGCCCTCCTGCTTTACCAGGTG
3' ss Score
9.1
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CACCGGGCAGCGCCGAGGGTTGCCGGCCGGCGCGCGGGGAGTAGAGGGCGCGGGCCGCAGTGCCGGGTTCCAGAGGGAGCTCTGCGCCGGGTCCTTCCCTGTGGTAGCCCCAGGACACCCCCAGC
Seq A exon
GTGCTGAGGAACCTCTAATCATCTCCCATGGATTTGTGATCAGCGTTGCAGCTCTCCCAGCAGCCCTGGACAGTG
Seq C2 exon
AGAACCTGCGTGCTGCTCCTTTGCTTCGGACCTCCGCCTCTGCCCGGGAGAAAGCCCAGGCCAGCCTGCTGGACAAGCAGAGACCATGAGAAGGAGAGTTCAGGGGTCCCAAACCAGGCCATCCTAGACCAGCCAGCTCCAGCTGATCCGCACGCAGCCACTTCGGCTACCTTCTACTGGCCAAAGGGAGTCCCAGGGCTCACCCAGATTCAGAGGTGGGGAAACTGAGTCCACCACTTGAGAAGAGTAGCTATAAAGACATATGAGCGAGGCCAGCTGAGCCCAGCACTGCGGCCAAGTCGAAGACTTTAGGAGCAATAAAAGTGCTTATTGTGTTTCAGTCATTTGAGTGTTGTGGTGGTTTGTTACGTAGCATTGCCTAACCGATACACTTGAGAACGGAGGGCTCCTGGCACCTGCAGCTTCCAATTTCCACCAGGGTCCAGGCTCCCTCCCTGCTGGTAGGGCTGTAATTAGTGTCTCCCCTTACCTGTAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183196_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCCAGAGGGAGCTCTG
R:
TTTGGGACCCCTGAACTCTCC
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development