RnoEX0021254 @ rn6
Exon Skipping
Gene
ENSRNOG00000021521 | Chst5
Description
carbohydrate sulfotransferase 5 [Source:RGD Symbol;Acc:1561144]
Coordinates
chr19:44115120-44135387:-
Coord C1 exon
chr19:44135240-44135387
Coord A exon
chr19:44118123-44118355
Coord C2 exon
chr19:44115120-44116962
Length
233 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTGTGTTCACAGGCT
3' ss Score
10.14
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
CCAGGCCAACTGGCTGCTTCCTTGCTCGGCTCCCGCCCTGGCTCCCGCCGGCGGCCCCAGGCAAAGAGCCACCACTCACTGAGCTGCTCATTGTATGCGCCCCGGGCGGGCAGCGCAGAGCAGCACAGAAGCGCAGCCGGCAGCGCAG
Seq A exon
GCTCGAGGAACCTCCAGGTACCTCCCACGGGTTTGTGAGCAACACAAGCCAGCTCTCCCAGCCCTAGACAGCAGTGAGTACTCACGGCAGGGGAAGGGCCAGCAGCCTGCCATGGGCACGCCTCTGCTCTGTCTCTCTGCTTCTCCCACTTCACTGGGCTCTTCTGAAACCCATGGCTTCCAGAGAACATCCTCGGTCTAGAGGACGTCCTAACTTCAACACTTTCTCCCCAG
Seq C2 exon
GCTCTAGCCAGAGGCATGCGGCTACCCCGCTTCTCCAGCACTGTAGTGCTTTCGCTCCTGATAGTGCAGACCGGCATCCTGGTCTTCCTGGTCTCCCGGCAAATGCCATCATCCCCAGCAGGCCGTGGGGAGCATGTGCATGTGCTGGTGCTGTCCTCCTGGCGCTCGGGCTCGTCTTTCGTGGGCCAGCTCTTCAGCCAACACCCGGATGTCTTCTACCTGATGGAGCCAGCTTGGCACGTGTGGGATGCGTTGTCGCAGGCCAGTGCCCCCGCGCTCCACATGGCCGTGCGCGACCTGATCCGTTCAGTGTTCCTATGCGACATGGACGTGTTCGATGCCTACCTGCCCTGGCGCCGCAATATCTCGGATCTCTTCCAGTGGGCAGTGAGCCGGGCGTTGTGCTCGCCTCCAGTCTGCGACGCCTTCGCTCGGGGCAACATTAGCAGCGAGGAGGTGTGTAAGCCTCTGTGTGCAACGCGGCCCTTCGGCCTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021521_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=1.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068522=Sulfotransfer_1=WD(100=79.3)
Main Inclusion Isoform:
ENSRNOT00000026262fB3119
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGCTCATTGTATGCGC
R:
AGCTGGCTCCATCAGGTAGAA
Band lengths:
303-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]